Factsheet for Bra035418.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY24499	Canola	nucleus	99.01	98.83
CDY33612	Canola	nucleus	97.47	93.58
Bra017891.1-P	Field mustard	nucleus	77.96	88.06
Bra027831.1-P	Field mustard	nucleus	53.57	79.49
AT1G59890.2	Thale cress	nucleus	79.86	75.75
Bra019933.1-P	Field mustard	nucleus	59.17	64.47
Bra003968.1-P	Field mustard	cytosol	6.96	49.68
KRG99216	Soybean	nucleus	54.47	43.66
KRH45772	Soybean	nucleus	54.65	43.37
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	3.52	43.33
Bra037066.1-P	Field mustard	nucleus	10.84	43.17
Bra012419.1-P	Field mustard	cytosol	3.34	43.02
Bra037065.1-P	Field mustard	nucleus	9.21	42.32
Bra016241.1-P	Field mustard	nucleus	48.78	41.89
Bra003967.1-P	Field mustard	nucleus	49.41	41.6
Bra008727.1-P	Field mustard	cytosol	14.54	40.76
PGSC0003DMT400058222	Potato	nucleus	49.41	40.07
Solyc05g006540.2.1	Tomato	nucleus	49.14	40.0
Bra006276.1-P	Field mustard	nucleus	46.88	38.56
Bra023501.1-P	Field mustard	nucleus	45.98	38.1
Bra040510.1-P	Field mustard	mitochondrion, nucleus	44.9	36.95
Bra007893.1-P	Field mustard	cytosol	2.35	32.5
KRH45776	Soybean	nucleus	26.56	31.89
Bra007894.1-P	Field mustard	nucleus	8.31	21.85
Bra024644.1-P	Field mustard	mitochondrion	4.88	16.07

Protein Annotations

Gene3D:1.20.1160.11	MapMan:12.3.2.4.2	EnsemblPlantsGene:Bra035418	EnsemblPlants:Bra035418.1	EnsemblPlants:Bra035418.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:HDAC_interact_dom	InterPro:IPR003822
UniProt:M4F2W8	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295	PFAM:PF16879
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF21	SMART:SM00761	SUPFAM:SSF47762	InterPro:Sin3_C
UniParc:UPI0002544AAA	SEG:seg	:	:	:	:

Description

AT1G59890 (E=0.0) SNL5 | SNL5 (SIN3-LIKE 5)

Coordinates

chrA01:+:16454025..16459201

Molecular Weight (calculated)

125155.0 Da

IEP (calculated)

6.338

GRAVY (calculated)

-0.671

Length

1107 amino acids

Sequence
(BLAST)

0001: MKRVREEVYV EAQTRGQTNG SRPLTIGGGG GGGNMGGLTT NDALSYLKAV KDMFQDKKDK YDTFLALMKD FKAQRVNTDG VIASVKELFK GYDDLLLGFN
0101: TFLPKGYRIT LPEKKPVAFG EAIDFVNKIK ARFGDDNRAY KRFLDILNMY RKEGKSISSV YQEVTLLFQG HEDLLAEFVN FLPNNSGSGS GSNAVPHDRS
0201: SSLHPMHFNK KIKIGSRLDE YTAHSDQRED GDENLVAAGN SRGKSLNQGQ WRQVEDNEDV VFGQKNNMVK GINELDLTDC VQCTPSYRHL PDDYPIPISS
0301: YRNSLGEKVL NDHWVSVTSG SEDYSFKHMR KNQYEESLFR CEDDRFELDM LLESVNAAIK RVETLLEKIN NNTISTPICI KEHLSVLNLR CIERLYGDYG
0401: LDVMEILKKN SHIALPVILT RLKQKQEEWA RCRFDFRKVW ADVYAKNHHK SLDHRSFYFK QQDSKNLSTK GLVAEIKDIS DSKHKEDPLH AIAVGTKPSF
0501: TPDLEFSYSD TQVHADLYQL IKYYCEEICA TEQSDKVMKL WVAFLEPMFG VPSRSQSGEA MLDVAKSKDN QEQHDACEAV KESTCDVSLV SNLKLITPPT
0601: TPNKENPTVQ GSSVAQETIQ QDKLHVGAAM NIKDTQPVAP PRKDLLMEGV ENRTDVIMGD QKVEREEGEL SPTESFEQDN HEVYRDNGVE SLQKLPDNVG
0701: SNKEQEHKGG AVCTEAKAKS NTLPKDDENK ITHASGSKCG GQVSSDEEHK GAMNCDRLGS VIESENEAVG MINANETEDG SLTFSERYLQ PVKPLAKHVP
0801: GALQVSESND SRVFYGNDSF YVLFRLHQML YERIQSAKIH SERKWKAPDP DNTSPDSYTR FMDALYNLLD GSSDNTKFED ECRALIGAQS YVLFTLDKLV
0901: QKFVKHLHSV AADETDTKLL QLYTYENYRK PGRFFDIVYH ENARALLHEQ NIYRIGYSSA QTRLAIQLMN NGNDHQPEVT AVTVEPGFAN YLQNDFLSLV
1001: PDEERPGLFL KRNMAKMSGP DESSGMLRAM EGLKIINEVE CKMACSSSKV KYEPNTSDLL YRVKQKKPKV NPNGLDNDKT PGSSETSRKR KISRFHMRLN
1101: RRLAALP

Best Arabidopsis Sequence Match ( AT1G59890.2 )
(BLAST)

0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP

Arabidopsis Description

SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.