Factsheet for Bra037065.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08302	Canola	cytosol	96.27	90.62
Bra037066.1-P	Field mustard	nucleus	94.61	82.01
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	15.77	42.22
Bra012419.1-P	Field mustard	cytosol	14.11	39.53
Bra003968.1-P	Field mustard	cytosol	23.65	36.77
Bra007893.1-P	Field mustard	cytosol	8.3	25.0
Bra024644.1-P	Field mustard	mitochondrion	20.33	14.58
Bra007894.1-P	Field mustard	nucleus	24.9	14.25
Bra027831.1-P	Field mustard	nucleus	40.66	13.14
Bra019933.1-P	Field mustard	nucleus	48.55	11.52
AT1G10450.3	Thale cress	endoplasmic reticulum, plastid	48.96	10.06
KRH45776	Soybean	nucleus	37.76	9.87
Bra035418.1-P	Field mustard	nucleus	42.32	9.21
Bra017891.1-P	Field mustard	nucleus	36.1	8.88
KRG99216	Soybean	nucleus	47.72	8.33
Bra040510.1-P	Field mustard	mitochondrion, nucleus	46.06	8.25
Bra006276.1-P	Field mustard	nucleus	46.06	8.25
Bra016241.1-P	Field mustard	nucleus	43.98	8.22
KRH45772	Soybean	nucleus	47.3	8.17
Bra023501.1-P	Field mustard	nucleus	45.23	8.16
PGSC0003DMT400058222	Potato	nucleus	45.64	8.06
Solyc05g006540.2.1	Tomato	nucleus	45.23	8.01
Bra003967.1-P	Field mustard	nucleus	42.74	7.83
Bra008727.1-P	Field mustard	cytosol	2.9	1.77

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra037065	EnsemblPlants:Bra037065.1	EnsemblPlants:Bra037065.1-P	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:IPR003822	UniProt:M4F7K4	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762
UniParc:UPI0002547506	SEG:seg	:	:	:	:

Description

AT1G10450 (E=6e-049) SNL6 | SNL6 (SIN3-LIKE 6)

Coordinates

chrA05:+:9735432..9736934

Molecular Weight (calculated)

27468.1 Da

IEP (calculated)

6.524

GRAVY (calculated)

-0.757

Length

241 amino acids

Sequence
(BLAST)

001: MRRDREDGYT SRGETNGQSP TIRDALHYVS AVRNTFHDDI GKYETFLEVM KDFRAQRDDH NGVIKRIKVL FNGHNDLILG FNTFLPKKYT ITFPLEEEKP
101: KTRVGFQDAF SFVTKIKARF SSDEHAYKRF LDIMEMYRKE RKSIIDVYEE SASLPNCAAI SDMLTRHSDK VENCDEKLVV FSGGNSTGNS LAKEGQGGYL
201: NVAENGQIQE YQSGQDGGRD TDRDDKTASS VSQIIASFQR M

Best Arabidopsis Sequence Match ( AT1G10450.1 )
(BLAST)

0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL

Arabidopsis Description

SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.