Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38781 | Canola | nucleus | 99.84 | 99.84 |
| CDY11625 | Canola | nucleus | 97.44 | 97.36 |
| Bra003967.1-P | Field mustard | nucleus | 84.87 | 83.19 |
| AT1G70060.2 | Thale cress | nucleus | 82.62 | 80.32 |
| Bra003968.1-P | Field mustard | cytosol | 7.37 | 61.29 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 62.14 | 55.2 |
| KRH69432 | Soybean | nucleus | 59.89 | 53.99 |
| KRH74716 | Soybean | nucleus | 54.54 | 53.46 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 54.62 | 52.5 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.65 | 52.22 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 50.89 | 50.58 |
| Bra017891.1-P | Field mustard | nucleus | 38.17 | 50.2 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 51.44 | 49.77 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 51.36 | 49.74 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 53.84 | 49.71 |
| Os01t0109700-01 | Rice | nucleus | 50.97 | 49.55 |
| Bra027831.1-P | Field mustard | nucleus | 28.55 | 49.33 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 51.44 | 49.29 |
| Bra012419.1-P | Field mustard | cytosol | 3.26 | 48.84 |
| Bra035418.1-P | Field mustard | nucleus | 41.89 | 48.78 |
| Bra019933.1-P | Field mustard | nucleus | 38.25 | 48.52 |
| GSMUA_Achr11P... | Banana | nucleus | 51.51 | 48.19 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 50.81 | 48.09 |
| EES00449 | Sorghum | nucleus | 53.53 | 47.88 |
| Zm00001d008429_P019 | Maize | nucleus | 53.45 | 47.75 |
| Zm00001d040123_P007 | Maize | nucleus | 52.99 | 47.6 |
| TraesCSU01G039900.1 | Wheat | nucleus | 51.98 | 46.89 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 49.88 | 46.63 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.75 | 46.51 |
| Bra006276.1-P | Field mustard | nucleus | 48.33 | 46.29 |
| KXG20992 | Sorghum | nucleus | 44.61 | 46.07 |
| Os05t0100500-01 | Rice | plastid | 12.88 | 45.11 |
| Zm00001d035776_P004 | Maize | nucleus | 43.91 | 44.88 |
| Bra023501.1-P | Field mustard | nucleus | 46.39 | 44.76 |
| Bra037065.1-P | Field mustard | nucleus | 8.22 | 43.98 |
| Bra037066.1-P | Field mustard | nucleus | 9.46 | 43.88 |
| HORVU3Hr1G000540.2 | Barley | plastid | 51.51 | 43.09 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 44.84 | 42.97 |
| Bra008727.1-P | Field mustard | cytosol | 12.34 | 40.25 |
| Bra007893.1-P | Field mustard | cytosol | 2.09 | 33.75 |
| Zm00001d041450_P002 | Maize | nucleus | 18.77 | 30.79 |
| Zm00001d041453_P001 | Maize | nucleus | 22.19 | 24.76 |
| Bra007894.1-P | Field mustard | nucleus | 7.53 | 23.04 |
| Bra024644.1-P | Field mustard | mitochondrion | 4.42 | 16.96 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra016241 | EnsemblPlants:Bra016241.1 | EnsemblPlants:Bra016241.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M4DIB4 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI0002541921 | SEG:seg | : | : | : | : |
Description
AT1G70060 (E=0.0) SNL4 | SNL4 (SIN3-LIKE 4)
Coordinates
chrA07:+:18679837..18685189
Molecular Weight (calculated)
146466.0 Da
IEP (calculated)
5.276
GRAVY (calculated)
-0.774
Length
1289 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGGGSAQK LTTNDALAYL KAVKDKFQDK REKYDEFLEV MKDFKAQRVD TSGVILRVKE LFKGNRELIL GFNTFLPKGF EITLLPEEDD QPPPKKPVEF
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTA STTNDPAKMS IRDRGGIKSL PTMRDSDKKD
0201: RINDLKTEHM DLDHERSLLK ESKEDVRRID KKNDYMDGRD RKGDGIDSQK EQFLLGKKKL TLRDNDSPGI SNQAREGGDK FRGDIATSST YDDKGHVQEL
0301: AFVDRVKAKL KTSEYQEFLR CLNLFSKEII SQPELQSLVG DLIGVYPDLI EAFRVFLVQC EKNDGLLSGI VTKKSLWSDG KVPQPTKSQD KDTEREREKA
0401: ERFRERDREK ERLEKAAASQ KWAKPINELD LLNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF
0501: ELDMLLESVN SATNRVEELL AKLNSNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVL DLLKKNAYLA LPVILTRLKQ KQEEWIRCRS DFNKVWADIY
0601: TKNYHRSLDH RSFYFKQQDS KNLSTKALLA EIKEIAEKKR AEDDALLALA AGNRRTVCSN MSFDYPDPDL HEDLYQLIKY SCGEMCSTEQ LDKVMKVWTE
0701: FLEPMFGVPS RPQGAEDRED AVKSTTNLSE CSPQNVVTVA NNGTRKASDL DRDVTAGKTA DALLRDNTKK DKMPKNLTTP DERPETKQAV SIERVHSSTT
0801: PLVDGLLSQR NGVSNSNPKS TALASGVEIE MKHNHVNGPR VEVFPNGTVA ETSTNQRPNE ASAKVEREEG ELSPTGEFEE DNFAENDLEP LSNGKDGGGG
0901: ENDGNAVDEG DESAPRSSDV SGNTSQNGDV SGTESGDGEG CYPEDDNKVE SEGEAEEEEE EGMSDAHDVA EGDNRPVLPI SVRNLLHVKP LAKYVPPALC
1001: DKYKDVTNSR VFYGNDSYYV LFRLHQILYD RILSAKINSS CPERMWKTSN SANPADSYSR FMNALYNLLD GTSDNPKFED DCRAIIGTQS YVLFTLDKLI
1101: YKLIKHLQAV AADEMDNKLH QLYLYEKSRK PEKYLDAVYY DNARVLLPDE DIYRIECELS TPTKLSMMLL NNGHDKPDVT SISMDQTFAS YLHNKFLSSQ
1201: PNVKENPRIY LNRNKRKNGE DQVKISNGLE CKITCSSSKV SYVFDTEDVL HRLKRKKVSN QSRQDPVVAS GSSIRQRRIQ SYQKLLTGQ
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTA STTNDPAKMS IRDRGGIKSL PTMRDSDKKD
0201: RINDLKTEHM DLDHERSLLK ESKEDVRRID KKNDYMDGRD RKGDGIDSQK EQFLLGKKKL TLRDNDSPGI SNQAREGGDK FRGDIATSST YDDKGHVQEL
0301: AFVDRVKAKL KTSEYQEFLR CLNLFSKEII SQPELQSLVG DLIGVYPDLI EAFRVFLVQC EKNDGLLSGI VTKKSLWSDG KVPQPTKSQD KDTEREREKA
0401: ERFRERDREK ERLEKAAASQ KWAKPINELD LLNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF KHMRKNQYEE SLFRCEDDRF
0501: ELDMLLESVN SATNRVEELL AKLNSNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVL DLLKKNAYLA LPVILTRLKQ KQEEWIRCRS DFNKVWADIY
0601: TKNYHRSLDH RSFYFKQQDS KNLSTKALLA EIKEIAEKKR AEDDALLALA AGNRRTVCSN MSFDYPDPDL HEDLYQLIKY SCGEMCSTEQ LDKVMKVWTE
0701: FLEPMFGVPS RPQGAEDRED AVKSTTNLSE CSPQNVVTVA NNGTRKASDL DRDVTAGKTA DALLRDNTKK DKMPKNLTTP DERPETKQAV SIERVHSSTT
0801: PLVDGLLSQR NGVSNSNPKS TALASGVEIE MKHNHVNGPR VEVFPNGTVA ETSTNQRPNE ASAKVEREEG ELSPTGEFEE DNFAENDLEP LSNGKDGGGG
0901: ENDGNAVDEG DESAPRSSDV SGNTSQNGDV SGTESGDGEG CYPEDDNKVE SEGEAEEEEE EGMSDAHDVA EGDNRPVLPI SVRNLLHVKP LAKYVPPALC
1001: DKYKDVTNSR VFYGNDSYYV LFRLHQILYD RILSAKINSS CPERMWKTSN SANPADSYSR FMNALYNLLD GTSDNPKFED DCRAIIGTQS YVLFTLDKLI
1101: YKLIKHLQAV AADEMDNKLH QLYLYEKSRK PEKYLDAVYY DNARVLLPDE DIYRIECELS TPTKLSMMLL NNGHDKPDVT SISMDQTFAS YLHNKFLSSQ
1201: PNVKENPRIY LNRNKRKNGE DQVKISNGLE CKITCSSSKV SYVFDTEDVL HRLKRKKVSN QSRQDPVVAS GSSIRQRRIQ SYQKLLTGQ
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.