Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78604 | Canola | nucleus | 98.29 | 98.0 |
| CDX70587 | Canola | nucleus | 96.88 | 96.24 |
| Bra023501.1-P | Field mustard | nucleus | 83.8 | 84.43 |
| AT5G15020.1 | Thale cress | nucleus | 85.22 | 83.91 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 69.09 | 69.14 |
| KRH18559 | Soybean | nucleus | 23.55 | 67.45 |
| KRG93437 | Soybean | nucleus | 62.33 | 59.84 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 60.25 | 58.56 |
| Bra008727.1-P | Field mustard | cytosol | 16.86 | 57.47 |
| KRH18561 | Soybean | nucleus | 38.19 | 56.98 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.72 | 56.2 |
| Solyc02g087370.1.1 | Tomato | cytosol | 7.95 | 55.73 |
| Solyc02g067570.2.1 | Tomato | nucleus | 54.46 | 54.38 |
| Bra003968.1-P | Field mustard | cytosol | 6.24 | 54.19 |
| Solyc02g087360.2.1 | Tomato | nucleus | 54.01 | 54.13 |
| PGSC0003DMT400003538 | Potato | nucleus | 53.71 | 53.28 |
| Bra016241.1-P | Field mustard | nucleus | 46.29 | 48.33 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.19 | 47.78 |
| Bra003967.1-P | Field mustard | nucleus | 46.21 | 47.3 |
| Bra035418.1-P | Field mustard | nucleus | 38.56 | 46.88 |
| Bra037066.1-P | Field mustard | nucleus | 9.58 | 46.4 |
| Bra017891.1-P | Field mustard | nucleus | 33.73 | 46.33 |
| Bra019933.1-P | Field mustard | nucleus | 34.84 | 46.16 |
| Bra037065.1-P | Field mustard | nucleus | 8.25 | 46.06 |
| Bra012419.1-P | Field mustard | cytosol | 2.9 | 45.35 |
| Bra027831.1-P | Field mustard | nucleus | 24.96 | 45.04 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 16.05 | 42.19 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.78 | 39.1 |
| Bra007893.1-P | Field mustard | cytosol | 2.01 | 33.75 |
| Bra007894.1-P | Field mustard | nucleus | 7.43 | 23.75 |
| Bra024644.1-P | Field mustard | mitochondrion | 5.05 | 20.24 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra006276 | EnsemblPlants:Bra006276.1 | EnsemblPlants:Bra006276.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M4CPY7 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI000253FBB5 | SEG:seg | : | : | : | : |
Description
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2)
Coordinates
chrA03:-:2788568..2794804
Molecular Weight (calculated)
152780.0 Da
IEP (calculated)
5.214
GRAVY (calculated)
-0.794
Length
1346 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRIRDDVYS SGSQFKRPLP SSRGESYVQS PVPGDEGVNS QKLTTDDALS YLKDVKEMFQ DQRDKYDMFL EVMKDFKAQR TDTSGVIARV KELFKGHNNL
0101: IFGFNTFLPK GFEITLDEVE EETPPKKTVE FEEAISFVNK IKKRFQSDEG VYKSFLEILN MYRKDDKDIT EVYNEVSALF EDHLDLLEEF TRFLPESLAA
0201: HSAAQLIRSQ AQRYHDRGSG PPLVRRMLME KDRRRERAVA SRGDRDHSVD RSDHNDDKAM VKMHREPKKR VDKENRERRS RDLDDGEAEQ DNLHHFSEKR
0301: KSSRRTEGFE AYSGPASHSE KNNLKSMYNQ AFVFCEKVKE RLCSQDDYQT FLKCLNIFSN GIIHRKELQN LVSDLLGKFP DLMDEFNQFF ERCESNDGFQ
0401: HLAGVMSKKS LSSEEHLSRP VKGEEKETET EREHKRDLDA AKEKERSNDK YMGKSIQELD LSDCERCTPS YRLLPSDYPI PSVRHRQKLG AAVLNDHWVS
0501: VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVG SAAKSAEELL NNIVEKKISI EGSFRVEDHF TALNLRCIER LYGDHGLDVT DLIRKNPAAA
0601: LPVILTRLKQ KQEEWTKCRE DFNAVWADVY AKNHYKSLDH RSFYFKQQDS KNLSAKALVT EIKDLKEKSQ EEDDVLLSVA AGHRQPIISH FEYEYLDKTI
0701: HEDLFKLVQF SCEEICSTKE QIGKVLRLWK SFLEMMLGVP PRAKGSNSVE DAVETKHHGA LTSGDVNVSS DSANLVSRQL KFAANGDDYA SSGASKHGAI
0801: GLLKRDSSAK ENCKDGDPAN KDGATCSTVK PQKDQENGNG ADKRSGDVDD RVATFLSGVE NNNGKVGSGD SSGSRGILSK SGDAIENTDT IVIANGVLPD
0901: ASKANSNYDE PGGPPNIEKE EGELSPTGDS EDNFVVYEDR GLKSTAKPEH SVEAEGENDD DADDEDGDDA SEGGEDASGT ESIGDECSQD GNGMEEEGEH
1001: DEIDGKAESE GEAEGMDSHL IEENNRLLPL SERVLLSVKP LSKHVAAAAL LDERQKDSRV FYGNDDFYVL FRLHRVLYER ILSAKTYCTG SELNRRNTKD
1101: TSSPDPYARF MSALFSLLNG SAESSKFEDE CRAIIGNQSY VLFTLEKLIY KLVKQLQAVV ADDMDNKLLQ LYEYEKSRKP RRVIDSVYYE NARILLHEEN
1201: IYRLECSSSP SRLSIQLMDS IIEKPEAYAV SMDPTFASYL QKEFLSNSSG KKVVPQAIVL KRNMRGYSGL DDLAVACKAM EGVEVINGLE CKMSCSSYKI
1301: SYVLDTEDFF HRKKKKQKKP SHEKSSSEQR KLYRVERFHK FLSASR
0101: IFGFNTFLPK GFEITLDEVE EETPPKKTVE FEEAISFVNK IKKRFQSDEG VYKSFLEILN MYRKDDKDIT EVYNEVSALF EDHLDLLEEF TRFLPESLAA
0201: HSAAQLIRSQ AQRYHDRGSG PPLVRRMLME KDRRRERAVA SRGDRDHSVD RSDHNDDKAM VKMHREPKKR VDKENRERRS RDLDDGEAEQ DNLHHFSEKR
0301: KSSRRTEGFE AYSGPASHSE KNNLKSMYNQ AFVFCEKVKE RLCSQDDYQT FLKCLNIFSN GIIHRKELQN LVSDLLGKFP DLMDEFNQFF ERCESNDGFQ
0401: HLAGVMSKKS LSSEEHLSRP VKGEEKETET EREHKRDLDA AKEKERSNDK YMGKSIQELD LSDCERCTPS YRLLPSDYPI PSVRHRQKLG AAVLNDHWVS
0501: VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVG SAAKSAEELL NNIVEKKISI EGSFRVEDHF TALNLRCIER LYGDHGLDVT DLIRKNPAAA
0601: LPVILTRLKQ KQEEWTKCRE DFNAVWADVY AKNHYKSLDH RSFYFKQQDS KNLSAKALVT EIKDLKEKSQ EEDDVLLSVA AGHRQPIISH FEYEYLDKTI
0701: HEDLFKLVQF SCEEICSTKE QIGKVLRLWK SFLEMMLGVP PRAKGSNSVE DAVETKHHGA LTSGDVNVSS DSANLVSRQL KFAANGDDYA SSGASKHGAI
0801: GLLKRDSSAK ENCKDGDPAN KDGATCSTVK PQKDQENGNG ADKRSGDVDD RVATFLSGVE NNNGKVGSGD SSGSRGILSK SGDAIENTDT IVIANGVLPD
0901: ASKANSNYDE PGGPPNIEKE EGELSPTGDS EDNFVVYEDR GLKSTAKPEH SVEAEGENDD DADDEDGDDA SEGGEDASGT ESIGDECSQD GNGMEEEGEH
1001: DEIDGKAESE GEAEGMDSHL IEENNRLLPL SERVLLSVKP LSKHVAAAAL LDERQKDSRV FYGNDDFYVL FRLHRVLYER ILSAKTYCTG SELNRRNTKD
1101: TSSPDPYARF MSALFSLLNG SAESSKFEDE CRAIIGNQSY VLFTLEKLIY KLVKQLQAVV ADDMDNKLLQ LYEYEKSRKP RRVIDSVYYE NARILLHEEN
1201: IYRLECSSSP SRLSIQLMDS IIEKPEAYAV SMDPTFASYL QKEFLSNSSG KKVVPQAIVL KRNMRGYSGL DDLAVACKAM EGVEVINGLE CKMSCSSYKI
1301: SYVLDTEDFF HRKKKKQKKP SHEKSSSEQR KLYRVERFHK FLSASR
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.