Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 90.0 | 49.66 |
| CDY42983 | Canola | nucleus | 66.25 | 32.72 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 16.25 | 14.44 |
| Bra003968.1-P | Field mustard | cytosol | 27.5 | 14.19 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 15.0 | 13.79 |
| Bra007894.1-P | Field mustard | nucleus | 71.25 | 13.54 |
| Bra012419.1-P | Field mustard | cytosol | 13.75 | 12.79 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 18.75 | 10.79 |
| Bra037066.1-P | Field mustard | nucleus | 31.25 | 8.99 |
| Bra037065.1-P | Field mustard | nucleus | 25.0 | 8.3 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 17.5 | 7.53 |
| Bra024644.1-P | Field mustard | mitochondrion | 21.25 | 5.06 |
| Bra027831.1-P | Field mustard | nucleus | 31.25 | 3.35 |
| Bra019933.1-P | Field mustard | nucleus | 31.25 | 2.46 |
| Bra035418.1-P | Field mustard | nucleus | 32.5 | 2.35 |
| Bra016241.1-P | Field mustard | nucleus | 33.75 | 2.09 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 35.0 | 2.08 |
| Bra003967.1-P | Field mustard | nucleus | 33.75 | 2.05 |
| Bra023501.1-P | Field mustard | nucleus | 33.75 | 2.02 |
| Bra006276.1-P | Field mustard | nucleus | 33.75 | 2.01 |
| Bra017891.1-P | Field mustard | nucleus | 21.25 | 1.73 |
| Bra008727.1-P | Field mustard | cytosol | 5.0 | 1.01 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.2 | EnsemblPlantsGene:Bra007893 | EnsemblPlants:Bra007893.1 | EnsemblPlants:Bra007893.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:IPR003822 | UniProt:M4CUJ8 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | SUPFAM:SSF47762 | UniParc:UPI0002546884 | SEG:seg |
Description
No Description!
Coordinates
chrA02:+:11670992..11671824
Molecular Weight (calculated)
9697.8 Da
IEP (calculated)
10.024
GRAVY (calculated)
-0.395
Length
80 amino acids
Sequence
(BLAST)
(BLAST)
1: MIIKRQSARD VLEYLQIVLN RFPDNREIYD KITKLLKDLR LARLRSTYND VISKVLYVLR DHQDLRVDFA AFLPARYRED
001: MKHLPVVSFK TMVANKKLTT TDALDFLHLV KTKYQDNREI YDSFLTIMKD FRGQRAKTCD VISKVKELFK GQPELLLGFN TFLPTGFEIT LSDDELTSNS
101: KFAHFDEAYE FVNKVKVVGQ NHTSN
101: KFAHFDEAYE FVNKVKVVGQ NHTSN
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.