Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007893.1-P | Field mustard | cytosol | 49.66 | 90.0 |
| CDY66875 | Canola | mitochondrion | 97.24 | 88.12 |
| CDY42981 | Canola | mitochondrion | 96.55 | 87.5 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 95.86 | 86.88 |
| CDY03764 | Canola | cytosol | 94.48 | 84.57 |
| CDY42983 | Canola | nucleus | 79.31 | 70.99 |
| CDY67989 | Canola | nucleus | 50.34 | 46.79 |
| CDY42986 | Canola | cytosol | 54.48 | 37.8 |
| CDY03763 | Canola | cytosol | 73.1 | 37.19 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 21.38 | 35.63 |
| CDY48380 | Canola | cytosol | 36.55 | 33.54 |
| CDY23529 | Canola | cytosol | 35.86 | 32.91 |
| CDY48381 | Canola | cytosol | 34.48 | 32.26 |
| CDY23528 | Canola | cytosol | 34.48 | 32.26 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 17.93 | 28.89 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 17.93 | 28.89 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 16.55 | 28.57 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 15.86 | 26.74 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 21.38 | 22.3 |
| CDY06480 | Canola | cytosol | 34.48 | 21.19 |
| CDY08302 | Canola | cytosol | 35.86 | 20.31 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 24.14 | 18.82 |
| CDY08301 | Canola | cytosol | 35.86 | 18.7 |
| CDY31594 | Canola | nucleus | 38.62 | 14.11 |
| CDY55066 | Canola | cytosol | 37.93 | 13.82 |
| CDY64433 | Canola | cytosol | 22.76 | 12.45 |
| CDY16235 | Canola | mitochondrion | 27.59 | 11.9 |
| CDY14678 | Canola | cytosol | 26.9 | 11.27 |
| CDY45153 | Canola | nucleus | 40.69 | 6.1 |
| CDY30912 | Canola | nucleus | 40.0 | 5.52 |
| CDY37976 | Canola | nucleus | 37.24 | 5.47 |
| CDX93425 | Canola | nucleus | 37.24 | 5.31 |
| CDY24499 | Canola | nucleus | 38.62 | 5.05 |
| CDY33612 | Canola | nucleus | 38.62 | 4.86 |
| CDY11625 | Canola | nucleus | 39.31 | 4.42 |
| CDX68358 | Canola | nucleus | 38.62 | 4.36 |
| CDY38781 | Canola | nucleus | 38.62 | 4.34 |
| CDY23527 | Canola | nucleus | 38.62 | 4.33 |
| CDX91007 | Canola | nucleus | 37.93 | 4.16 |
| CDX85568 | Canola | nucleus | 37.93 | 4.12 |
| CDY28683 | Canola | mitochondrion, nucleus | 37.93 | 4.09 |
| CDX78604 | Canola | nucleus | 37.93 | 4.07 |
| CDX70587 | Canola | nucleus | 37.93 | 4.06 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 3.45 | 1.92 |
| CDY28682 | Canola | nucleus | 0.69 | 0.08 |
| CDY31595 | Canola | nucleus | 0.0 | 0.0 |
| CDY55065 | Canola | nucleus | 0.0 | 0.0 |
| CDY64434 | Canola | nucleus | 0.0 | 0.0 |
| CDY70453 | Canola | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:A0A078I079 | UniProt:A0A078I079 | EnsemblPlants:CDY42979 | ProteinID:CDY42979 |
| ProteinID:CDY42979.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | EnsemblPlantsGene:GSBRNA2T00075762001 |
| InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 | PANTHER:PTHR12346 |
| PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 | UniParc:UPI0004EE7CC4 | : | : | : |
Description
BnaC02g19530DBnaC02g19530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I079]
Coordinates
chrLK032541:+:4620..5572
Molecular Weight (calculated)
17378.1 Da
IEP (calculated)
9.890
GRAVY (calculated)
-0.566
Length
145 amino acids
Sequence
(BLAST)
(BLAST)
001: MIIKRQSTRD VREYLQIVLN RFPDNCEIYD KITKLLKDLR LARVRSTYND VISKVSQLFK EHKVLLLGFN KFLPPGYKIT LPKDQTQRRK PEFRDAAEFI
101: NKVKERLQDE HAYNLTEVHH EVLYALRDHQ DLCVDFAAFL PARYR
101: NKVKERLQDE HAYNLTEVHH EVLYALRDHQ DLCVDFAAFL PARYR
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Arabidopsis Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.