Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY45153 | Canola | nucleus | 83.24 | 90.29 |
| CDY55065 | Canola | nucleus | 52.76 | 79.26 |
| CDY31595 | Canola | nucleus | 50.76 | 77.02 |
| CDY31594 | Canola | nucleus | 28.86 | 76.32 |
| CDY24499 | Canola | nucleus | 80.19 | 75.92 |
| CDY55066 | Canola | cytosol | 28.38 | 74.87 |
| CDY33612 | Canola | nucleus | 80.67 | 73.46 |
| AT1G59890.2 | Thale cress | nucleus | 81.52 | 73.35 |
| CDY37976 | Canola | nucleus | 59.43 | 63.16 |
| CDX93425 | Canola | nucleus | 60.38 | 62.4 |
| CDY48380 | Canola | cytosol | 9.24 | 61.39 |
| CDY23529 | Canola | cytosol | 9.24 | 61.39 |
| CDY64434 | Canola | nucleus | 3.33 | 56.45 |
| CDY48381 | Canola | cytosol | 7.43 | 50.32 |
| CDY23528 | Canola | cytosol | 7.43 | 50.32 |
| CDY06480 | Canola | cytosol | 10.95 | 48.73 |
| CDY67989 | Canola | nucleus | 7.05 | 47.44 |
| CDY08302 | Canola | cytosol | 11.43 | 46.88 |
| CDY08301 | Canola | cytosol | 11.9 | 44.96 |
| CDY71516 | Canola | cytosol, mitochondrion, nucleus | 10.86 | 43.85 |
| CDY70453 | Canola | cytosol | 13.81 | 43.28 |
| CDY11625 | Canola | nucleus | 51.81 | 42.17 |
| KRG99216 | Soybean | nucleus | 55.43 | 42.14 |
| CDX68358 | Canola | nucleus | 51.33 | 41.98 |
| CDY42981 | Canola | mitochondrion | 6.38 | 41.88 |
| CDY38781 | Canola | nucleus | 51.33 | 41.82 |
| KRH45772 | Soybean | nucleus | 55.52 | 41.79 |
| CDY23527 | Canola | nucleus | 51.43 | 41.73 |
| CDY28457 | Canola | cytoskeleton, cytosol, nucleus | 3.33 | 41.67 |
| CDY66875 | Canola | mitochondrion | 6.29 | 41.25 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 3.52 | 41.11 |
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 3.52 | 41.11 |
| CDY40291 | Canola | cytoskeleton, cytosol, nucleus | 3.33 | 40.7 |
| CDY42984 | Canola | cytosol, mitochondrion, nucleus | 6.19 | 40.62 |
| CDY03764 | Canola | cytosol | 6.19 | 40.12 |
| CDY42979 | Canola | cytosol, mitochondrion, nucleus | 5.52 | 40.0 |
| PGSC0003DMT400058222 | Potato | nucleus | 51.52 | 39.63 |
| Solyc05g006540.2.1 | Tomato | nucleus | 51.05 | 39.41 |
| CDX78604 | Canola | nucleus | 48.48 | 37.7 |
| CDX91007 | Canola | nucleus | 47.43 | 37.64 |
| CDX70587 | Canola | nucleus | 48.29 | 37.42 |
| CDX85568 | Canola | nucleus | 47.14 | 37.05 |
| CDY28683 | Canola | mitochondrion, nucleus | 47.05 | 36.7 |
| CDY42983 | Canola | nucleus | 5.24 | 33.95 |
| CDY28682 | Canola | nucleus | 37.62 | 31.88 |
| KRH45776 | Soybean | nucleus | 27.43 | 31.24 |
| CDY64433 | Canola | cytosol | 6.48 | 25.66 |
| CDY03763 | Canola | cytosol | 6.67 | 24.56 |
| CDY42986 | Canola | cytosol | 4.48 | 22.49 |
| CDY16235 | Canola | mitochondrion | 5.33 | 16.67 |
| CDY14678 | Canola | cytosol | 5.24 | 15.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | GO:A0A078H0A4 | UniProt:A0A078H0A4 | EnsemblPlants:CDY30912 | ProteinID:CDY30912 |
| ProteinID:CDY30912.1 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| EnsemblPlantsGene:GSBRNA2T00046451001 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 |
| PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0004EECD52 | SEG:seg | : | : |
Description
BnaC09g14940DBnaC09g14940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0A4]
Coordinates
chrLK032263:+:418233..423488
Molecular Weight (calculated)
119332.0 Da
IEP (calculated)
6.597
GRAVY (calculated)
-0.691
Length
1050 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRVREEVYV ETNGKPLTIG GGGNTGGLTT GDALSYLKAV KDIFQDKKDK YDTFLEVMKD FKAQRVDTSG VIARVRVLFK GYDDLLLGFN TFLPKGYKIT
0101: LPEKKTVDFG EAIEFVNKIK ARFGSDDRAY KKFLDILNMY RKESKSISDV YQEVTLLFQD HEDLLAEFAH FLPDNSGSGS AHYPLSGRNA VPGAPVPAMH
0201: PRNFEKRIKI RNEYTEHSDQ REDGDENLVA CSAGQWPGYL KVGDKEGIQD YENGSKDNGS HKILPSTSNH VAKGINELDL SECAQCSPSY RLLPDDYLIQ
0301: IPSYRNTLGE KVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA AINRVEALLE KINNNTISLE TPICIKEHLS GKCIERLYGD
0401: YGLDVMDFLK KNSHVALPVI LTRLKQKQEE WARCRSDFRK VWAEVYAKNH HKSLDHRSFY FKQQDSKNLS TKGLVAEIKD ISDRKHKEDP LHAIAVGTKP
0501: SFTPDVEFSY TDTQVHADLY QLIKYYCEEI CATEQSDKVM KLWVTFLEPM FGVPSRSQTD ETVIDVAKSK DNQEQREAVK DHTRDSSPVS NLKPLTPPKT
0601: PNKESPTIGS SFAQDKLHAG AAMNTEHKVE REEGELSPTE SFEHDNSEVY RDNGVESVQK LPDNVRSNTS PEDDGSKTTL KLIEANENAS KDIASGSKFG
0701: GQVSLDEEHK RPMNCDQLGE SFSRFSERSL QPVKPLAKHV PVALHDSPNA SRVFYGNDSF YVLFRLHQML YERILSAKIH SERKWKAPDP DNTSPDSYTR
0801: FMDALYNLLD GSSDNTKFED ECRAIIGAQS YILFTLDKLV QKFVKHLHAV AADETDTRLL QLQTYEKYRK PGRFFEIVYH ENARALLHDQ NIYRIEYSSA
0901: QTRLAIQLMN SGNDQPEVTA VAVEPGFANY LQNEFLSLVP DEEKPGLFLK RNKAKMSGPD ESSGMSRAME GLKIINEVEC KMCCSSSKVK YEPNTSDLLY
1001: RSKQKKPKLN PNGLDNDKTT PSSTEISRKT RISRFHTSLN RRLVALRPLP
0101: LPEKKTVDFG EAIEFVNKIK ARFGSDDRAY KKFLDILNMY RKESKSISDV YQEVTLLFQD HEDLLAEFAH FLPDNSGSGS AHYPLSGRNA VPGAPVPAMH
0201: PRNFEKRIKI RNEYTEHSDQ REDGDENLVA CSAGQWPGYL KVGDKEGIQD YENGSKDNGS HKILPSTSNH VAKGINELDL SECAQCSPSY RLLPDDYLIQ
0301: IPSYRNTLGE KVLNDHWVSV TSGSEDYSFK HMRKNQYEES LFRCEDDRFE LDMLLESVNA AINRVEALLE KINNNTISLE TPICIKEHLS GKCIERLYGD
0401: YGLDVMDFLK KNSHVALPVI LTRLKQKQEE WARCRSDFRK VWAEVYAKNH HKSLDHRSFY FKQQDSKNLS TKGLVAEIKD ISDRKHKEDP LHAIAVGTKP
0501: SFTPDVEFSY TDTQVHADLY QLIKYYCEEI CATEQSDKVM KLWVTFLEPM FGVPSRSQTD ETVIDVAKSK DNQEQREAVK DHTRDSSPVS NLKPLTPPKT
0601: PNKESPTIGS SFAQDKLHAG AAMNTEHKVE REEGELSPTE SFEHDNSEVY RDNGVESVQK LPDNVRSNTS PEDDGSKTTL KLIEANENAS KDIASGSKFG
0701: GQVSLDEEHK RPMNCDQLGE SFSRFSERSL QPVKPLAKHV PVALHDSPNA SRVFYGNDSF YVLFRLHQML YERILSAKIH SERKWKAPDP DNTSPDSYTR
0801: FMDALYNLLD GSSDNTKFED ECRAIIGAQS YILFTLDKLV QKFVKHLHAV AADETDTRLL QLQTYEKYRK PGRFFEIVYH ENARALLHDQ NIYRIEYSSA
0901: QTRLAIQLMN SGNDQPEVTA VAVEPGFANY LQNEFLSLVP DEEKPGLFLK RNKAKMSGPD ESSGMSRAME GLKIINEVEC KMCCSSSKVK YEPNTSDLLY
1001: RSKQKKPKLN PNGLDNDKTT PSSTEISRKT RISRFHTSLN RRLVALRPLP
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSE LSRKKRISRF HMSLNRRLVA LP
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAESLA NQGQWPGYPK VEDTEGIQIY ESNGGHERDP DIGSQKNLLS
0301: TNHMAKAINE LDLTDCAQCT PSYRRLPDDY PIQIPSYRNS LGEKVLNDHW VSVTSGSEDY SFKHMRKNQY EESLFRCEDD RFELDMLLES VSAAIKRVES
0401: LLEKINNNTI SIETPICIRE HLSELNLRCI ERLYGDYGLD VMDFLKKNSH IALPVILTRL KQKQEEWARC RADFRKVWAE VYAKNHHKSL DHRSFYFKQQ
0501: DSKNLSTKGL VAEIKDISER KHKEDLLRAI AVGTKPSFTP DVEFIYTDTK VHTDLYKLIK YYCEEICATE QSDKVMKLWV TFLEPMFGVP SRSETIETMK
0601: DVAKIEDNQE HHDASEAVKE NTCDGSMASN LKPLTPPKMP NKENPMIQGS SFAQDLPVNT GESIQQDKLH DVAAITNEDS QPSKLVSTRN DLIMEGVENR
0701: SRVSDVSMGG HKVEREEGEL SPTESCEQEN FEVYKENGLE PVQKLPDNEI SNTDREPKEG ACGTEAVTRS NALPEDDDNK ITQKLSEGDE NASKFIVSAS
0801: KFGGQVSSDE EHKGAESENE AGGMVNSNEG EDGSFFTFSE RYLQPVKPLA KHVPGTLQAS ECDTRNDSRV FYGNDSLYVL FRLHQMLYER IQSAKIHSER
0901: KWKAPDSTST DSYTRFMEAL YNLLDGSSDN TKFEDECRAI IGAQSYVLFT LDKLVQKFVK HLHAVAADET DTKLLQLYAY ENYRKPGRFF DIVYHENARA
1001: LLHDQNIYRI EYSSAQTRLG IQLMNSWNDQ PEVTAVTVEP GFANYLQNDF LSFVSDEEKP GLFLKRNKAK LSGPGEESLG MSRALEGLNI INEVECKIAC
1101: SSFKVKYEPH TADLLYRRKQ KKATLNPTGP ENVKTSDSSE LSRKKRISRF HMSLNRRLVA LP
Arabidopsis Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.