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Thale cress
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Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 4
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:nucleus
BaCelLo:nucleus
MultiLoc:nucleus
PProwler:mitochondrion
WoLF PSORT:nucleus
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
AT1G10250.1 Thale cress cytosol 5.74 87.01
CDY30912 Canola nucleus 73.35 81.52
Bra027831.1-P Field mustard nucleus 51.07 79.89
Bra035418.1-P Field mustard nucleus 75.75 79.86
CDY45153 Canola nucleus 65.9 79.44
CDY31595 Canola nucleus 46.79 78.9
CDY24499 Canola nucleus 74.98 78.9
Bra017891.1-P Field mustard nucleus 66.24 78.88
CDY31594 Canola nucleus 26.65 78.34
CDY33612 Canola nucleus 75.32 76.24
AT1G10450.3 Thale cress endoplasmic reticulum, plastid 61.95 61.64
AT1G70030.1 Thale cress cytosol 7.37 53.75
AT5G15025.1 Thale cress cytosol, nucleus, peroxisome 5.4 51.64
AT1G24200.1 Thale cress cytosol 8.4 50.0
KRG99216 Soybean nucleus 54.16 45.76
KRH45772 Soybean nucleus 54.07 45.23
AT5G15040.2 Thale cress cytoskeleton, cytosol, nucleus 3.17 42.53
PGSC0003DMT400058222 Potato nucleus 49.01 41.9
Solyc05g006540.2.1 Tomato nucleus 48.76 41.84
AT1G70060.2 Thale cress nucleus 47.39 41.7
AT1G24190.3 Thale cress nucleus 46.7 40.73
AT5G35610.1 Thale cress cytosol 5.4 40.65
AT3G01320.1 Thale cress mitochondrion, nucleus 45.67 38.85
AT5G15020.1 Thale cress nucleus 45.16 38.55
AT1G27250.1 Thale cress nucleus 4.37 37.23
AT1G27220.1 Thale cress nucleus 5.57 35.33
KRH45776 Soybean nucleus 27.16 34.38
AT1G24210.1 Thale cress cytosol 4.54 34.19
AT5G15030.1 Thale cress endoplasmic reticulum 3.94 33.09
AT1G27240.1 Thale cress cytosol 4.63 29.03
AT1G27260.1 Thale cress cytosol 4.8 25.23
AT1G24230.1 Thale cress cytosol 4.97 23.67
AT1G27270.1 Thale cress cytosol 4.88 23.65
AT1G27280.1 Thale cress cytosol 4.54 23.56
AT1G24250.1 Thale cress cytosol 5.06 23.41
AT1G23810.1 Thale cress cytosol, nucleus, peroxisome 4.8 23.24
AT1G24220.1 Thale cress nucleus 5.66 8.87
Protein Annotations
Gene3D:1.20.1160.11MapMan:12.3.2.4.2EntrezGene:842283ProteinID:AEE33636.1ArrayExpress:AT1G59890EnsemblPlantsGene:AT1G59890
RefSeq:AT1G59890TAIR:AT1G59890RefSeq:AT1G59890-TAIR-GEnsemblPlants:AT1G59890.2TAIR:AT1G59890.2Unigene:At.36763
ncoils:CoilUniProt:F4IEM8GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006139GO:GO:0006355GO:GO:0008150GO:GO:0008152GO:GO:0009058GO:GO:0009987
InterPro:HDAC_interact_domInterPro:IPR003822RefSeq:NP_001185268.1InterPro:PAHInterPro:PAH_sfPFAM:PF02671
PFAM:PF08295PFAM:PF16879PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001016PO:PO:0001017PO:PO:0001054PO:PO:0001078PO:PO:0001081
PO:PO:0001185PO:PO:0004507PO:PO:0007064PO:PO:0007095PO:PO:0007098PO:PO:0007103
PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616PO:PO:0008019PO:PO:0009005
PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025PO:PO:0009029PO:PO:0009030
PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047PO:PO:0009052PO:PO:0020030
PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022PO:PO:0025195PO:PO:0025281
PFscan:PS51477PANTHER:PTHR12346PANTHER:PTHR12346:SF21SMART:SM00761Symbol:SNL5SUPFAM:SSF47762
InterPro:Sin3_CUniParc:UPI0001E92BB1SEG:seg:::
Description
SNL5SIN3-like 5 [Source:UniProtKB/TrEMBL;Acc:F4IEM8]
Coordinates
chr1:+:22043643..22051114
Molecular Weight (calculated)
133034.0 Da
IEP (calculated)
5.628
GRAVY (calculated)
-0.720
Length
1167 amino acids
Sequence
(BLAST)
0001: MKRVREEVYV EPQMRGPTVS SRGETNGRPS TISGGGTTGG LTTVDALTYL KAVKDMFQDN KEKYETFLGV MKDFKAQRVD TNGVIARVKD LFKGYDDLLL
0101: GFNTFLPKGY KITLQPEDEK PKKPVDFQVA IEFVNRIKAR FGGDDRAYKK FLDILNMYRK ETKSINEVYQ EVTLLFQDHE DLLGEFVHFL PDFRGSVSVN
0201: DPLFQRNTIP RDRNSTFPGM HPKHFEKKIK RSRHDEYTEL SDQREDGDEN LVAYSAGNSL GKSLANQGQW PGYPKVEDTE GIQIYESNGG HERDPDIGSQ
0301: KNLLSTNHMA KAINELDLTD CAQCTPSYRR LPDDYPIQIP SYRNSLGEKV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF RCEDDRFELD MLLESVSAAI
0401: KRVESLLEKI NNNTISIETP ICIREHLSEL NLRCIERLYG DYGLDVMDFL KKNSHIALPV ILTRLKQKQE EWARCRADFR KVWAEVYAKN HHKSLDHRSF
0501: YFKQQDSKNL STKGLVAEIK DISERKHKED LLRAIAVGTK PSFTPDVEFI YTDTKVHTDL YKLIKYYCEE ICATEQSDKV MKLWVTFLEP MFGVPSRSET
0601: IETMKDVAKI EDNQEHHDAS EAVKENTCDG SMASNLKPLT PPKMPNKENP MIQGSSFAQD LPVNTGESIQ QDKLHDVAAI TNEDSQPSKL VSTRNDLIME
0701: GVENRSRVSD VSMGGHKVER EEGELSPTES CEQENFEVYK ENGLEPVQKL PDNEISNTDR EPKEGACGTE AVTRSNALPE DDDNKITQKL SEGDENASKF
0801: IVSASKFGGQ VSSDEEHKGA ESENEAGGMV NSNEGEDGSF FTFSERYLQP VKPLAKHVPG TLQASECDTR NDSRVFYGND SLYVLFRLHQ MLYERIQSAK
0901: IHSERKWKAP DSTSTDSYTR FMEALYNLLD GSSDNTKFED ECRAIIGAQS YVLFTLDKLV QKFVKHLHAV AADETDTKLL QLYAYENYRK PGRFFDIVYH
1001: ENARALLHDQ NIYRIEYSSA QTRLGIQLMN SWNDQPEVTA VTVEPGFANY LQNDFLSFVS DEEKPGLFLK RNKAKLSGPG EESLGMSRAL EGLNIINEVE
1101: CKIACSSFKV KYEPHTADLL YRRKQKKATL NPTGPENVKT SDSSELSRKK RISRFHMSLN RRLVALP
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.