Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G24210.1 | Thale cress | cytosol | 47.31 | 56.77 |
| AT1G27260.1 | Thale cress | cytosol | 35.48 | 29.73 |
| AT1G70030.1 | Thale cress | cytosol | 25.27 | 29.38 |
| CDY16235 | Canola | mitochondrion | 51.61 | 28.57 |
| Bra024644.1-P | Field mustard | mitochondrion | 51.61 | 28.57 |
| AT1G27280.1 | Thale cress | cytosol | 34.41 | 28.44 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 12.9 | 27.59 |
| CDY14678 | Canola | cytosol | 50.54 | 27.17 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 34.41 | 26.56 |
| AT1G27270.1 | Thale cress | cytosol | 32.8 | 25.31 |
| AT1G24200.1 | Thale cress | cytosol | 26.34 | 25.0 |
| AT1G24250.1 | Thale cress | cytosol | 33.87 | 25.0 |
| AT1G24230.1 | Thale cress | cytosol | 32.8 | 24.9 |
| AT5G35610.1 | Thale cress | cytosol | 19.89 | 23.87 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 14.52 | 22.13 |
| AT1G27250.1 | Thale cress | nucleus | 15.05 | 20.44 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 15.05 | 20.14 |
| AT1G27220.1 | Thale cress | nucleus | 15.59 | 15.76 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 15.59 | 15.59 |
| AT1G24220.1 | Thale cress | nucleus | 39.78 | 9.95 |
| AT1G59890.2 | Thale cress | nucleus | 29.03 | 4.63 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 28.49 | 4.52 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 32.8 | 4.45 |
| AT1G24190.3 | Thale cress | nucleus | 31.18 | 4.33 |
| AT1G70060.2 | Thale cress | nucleus | 30.65 | 4.3 |
| AT5G15020.1 | Thale cress | nucleus | 29.03 | 3.95 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839612 | UniProt:A0A178W373 | ProteinID:AAF79867.1 | ProteinID:AAF99723.1 |
| ProteinID:AEE30797.1 | ArrayExpress:AT1G27240 | EnsemblPlantsGene:AT1G27240 | RefSeq:AT1G27240 | TAIR:AT1G27240 | RefSeq:AT1G27240-TAIR-G |
| EnsemblPlants:AT1G27240.1 | TAIR:AT1G27240.1 | Unigene:At.51784 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 |
| GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR003822 | RefSeq:NP_174043.1 | UniProt:O04571 | ProteinID:OAP11995.1 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PO:PO:0000013 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009031 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 |
| SUPFAM:SSF47762 | UniParc:UPI00000A4851 | SEG:seg | : | : | : |
Description
F17L21.3 [Source:UniProtKB/TrEMBL;Acc:O04571]
Coordinates
chr1:+:9466237..9467076
Molecular Weight (calculated)
22007.6 Da
IEP (calculated)
7.966
GRAVY (calculated)
-0.551
Length
186 amino acids
Sequence
(BLAST)
(BLAST)
001: MVERRVQVEP TLSDAHSYIT AVKEAFHDEP TKYEEFIKLM NDIRDHGVDK ASGIAKLTEL IKGHPRLLRG LSFFFPQVNR DIHHEAKRTI ILKDKATIPP
101: EAAYRGAKST YTKIKQIEPD WENFMNMLKT RFRSLDTHVV ESFLKIMIMY DEGKKSEKEV QEEVVDLLYY HEDLIDKFFR LFNMRK
101: EAAYRGAKST YTKIKQIEPD WENFMNMLKT RFRSLDTHVV ESFLKIMIMY DEGKKSEKEV QEEVVDLLYY HEDLIDKFFR LFNMRK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.