Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27240.1 | Thale cress | cytosol | 56.77 | 47.31 |
| AT1G27260.1 | Thale cress | cytosol | 43.87 | 30.63 |
| AT1G70030.1 | Thale cress | cytosol | 29.68 | 28.75 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 44.52 | 28.63 |
| AT1G27270.1 | Thale cress | cytosol | 44.52 | 28.63 |
| AT1G24250.1 | Thale cress | cytosol | 45.16 | 27.78 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 15.48 | 27.59 |
| AT1G27280.1 | Thale cress | cytosol | 36.77 | 25.33 |
| AT1G24200.1 | Thale cress | cytosol | 31.61 | 25.0 |
| AT1G24230.1 | Thale cress | cytosol | 38.71 | 24.49 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 18.71 | 23.77 |
| AT5G35610.1 | Thale cress | cytosol | 23.23 | 23.23 |
| AT1G27250.1 | Thale cress | nucleus | 20.0 | 22.63 |
| Bra024644.1-P | Field mustard | mitochondrion | 47.74 | 22.02 |
| CDY16235 | Canola | mitochondrion | 47.74 | 22.02 |
| CDY14678 | Canola | cytosol | 47.1 | 21.1 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 18.71 | 20.86 |
| AT1G27220.1 | Thale cress | nucleus | 20.65 | 17.39 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 18.71 | 15.59 |
| AT1G24220.1 | Thale cress | nucleus | 44.52 | 9.27 |
| AT1G59890.2 | Thale cress | nucleus | 34.19 | 4.54 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 33.55 | 4.43 |
| AT1G24190.3 | Thale cress | nucleus | 36.13 | 4.19 |
| AT1G70060.2 | Thale cress | nucleus | 35.48 | 4.15 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 36.13 | 4.08 |
| AT5G15020.1 | Thale cress | nucleus | 33.55 | 3.8 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839035 | UniProt:A0A178W7N3 | ProteinID:AEE30496.1 | ArrayExpress:AT1G24210 |
| EnsemblPlantsGene:AT1G24210 | RefSeq:AT1G24210 | TAIR:AT1G24210 | RefSeq:AT1G24210-TAIR-G | EnsemblPlants:AT1G24210.1 | TAIR:AT1G24210.1 |
| EMBL:AY086413 | Unigene:At.41463 | EMBL:BT024693 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR003822 | RefSeq:NP_564212.1 |
| ProteinID:OAP14480.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001078 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007115 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009031 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 |
| UniProt:Q8LCT6 | SUPFAM:SSF47762 | UniParc:UPI00000A190C | : | : | : |
Description
At1g24210 [Source:UniProtKB/TrEMBL;Acc:Q8LCT6]
Coordinates
chr1:-:8573544..8575184
Molecular Weight (calculated)
17918.8 Da
IEP (calculated)
6.241
GRAVY (calculated)
-0.075
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGRRVSPAL TKDDAHSYII AVKETFHDEP TKYQEFIKLL NGVCDHRVDK YSVIARVEEL MKDHQDLLLG FSVFLPPVSV EDFINKLKTR FQSLDTHVVG
101: AIRGLMKMFK EGKMSVKEVQ EEVIDVLFYH EDLIEDFLRF FTKNPVSTAS LLLQL
101: AIRGLMKMFK EGKMSVKEVQ EEVIDVLFYH EDLIEDFLRF FTKNPVSTAS LLLQL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.