Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G27260.1 | Thale cress | cytosol | 39.56 | 40.09 |
| AT1G24210.1 | Thale cress | cytosol | 25.33 | 36.77 |
| AT1G27270.1 | Thale cress | cytosol | 39.11 | 36.51 |
| AT1G24230.1 | Thale cress | cytosol | 38.22 | 35.1 |
| AT1G27240.1 | Thale cress | cytosol | 28.44 | 34.41 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 36.44 | 34.02 |
| AT1G24250.1 | Thale cress | cytosol | 37.33 | 33.33 |
| AT1G24200.1 | Thale cress | cytosol | 25.33 | 29.08 |
| AT1G70030.1 | Thale cress | cytosol | 20.0 | 28.12 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 10.67 | 27.59 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 13.78 | 25.41 |
| AT1G27250.1 | Thale cress | nucleus | 14.67 | 24.09 |
| AT5G35610.1 | Thale cress | cytosol | 16.44 | 23.87 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 14.22 | 23.02 |
| AT1G27220.1 | Thale cress | nucleus | 16.0 | 19.57 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 13.33 | 16.13 |
| AT1G24220.1 | Thale cress | nucleus | 43.56 | 13.17 |
| AT1G59890.2 | Thale cress | nucleus | 23.56 | 4.54 |
| AT5G15020.1 | Thale cress | nucleus | 27.56 | 4.54 |
| AT1G24190.3 | Thale cress | nucleus | 26.22 | 4.41 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 26.67 | 4.37 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 22.67 | 4.35 |
| AT1G70060.2 | Thale cress | nucleus | 24.89 | 4.22 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839616 | ProteinID:AEE30801.1 | ArrayExpress:AT1G27280 | EnsemblPlantsGene:AT1G27280 |
| RefSeq:AT1G27280 | TAIR:AT1G27280 | RefSeq:AT1G27280-TAIR-G | EnsemblPlants:AT1G27280.1 | TAIR:AT1G27280.1 | Unigene:At.51788 |
| UniProt:F4HR64 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR003822 | RefSeq:NP_174047.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF0 | SUPFAM:SSF47762 | UniParc:UPI0000162EDF | : | : |
Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HR64]
Coordinates
chr1:+:9474027..9474990
Molecular Weight (calculated)
26375.4 Da
IEP (calculated)
5.580
GRAVY (calculated)
-0.328
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEVYHDEPE KFNHILHLIR DYFNHRDDRA RITACMGELM RDHLNLLVRF FDFFPAEASE GLAQLQTIAA TSVSPDSTID DAVSYINTVK EAFHDEPAKY
101: YEFFQLFYDI RYRLIDVAGG ITRVEELLKA HKNLLVRLNA FLPPEAQRIL HLKIEQRAAS DINKRKRVAS FIGKLKERFQ GDDRHVYESF LEILTMYQEG
201: NKSVNDLYQE VGFLVGTLWL DYTFS
101: YEFFQLFYDI RYRLIDVAGG ITRVEELLKA HKNLLVRLNA FLPPEAQRIL HLKIEQRAAS DINKRKRVAS FIGKLKERFQ GDDRHVYESF LEILTMYQEG
201: NKSVNDLYQE VGFLVGTLWL DYTFS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.