Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 62.61 | 57.68 |
| AT1G27270.1 | Thale cress | cytosol | 59.01 | 54.36 |
| AT1G24250.1 | Thale cress | cytosol | 60.81 | 53.57 |
| AT1G24210.1 | Thale cress | cytosol | 30.63 | 43.87 |
| AT1G24230.1 | Thale cress | cytosol | 48.2 | 43.67 |
| AT1G27280.1 | Thale cress | cytosol | 40.09 | 39.56 |
| AT1G27240.1 | Thale cress | cytosol | 29.73 | 35.48 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 10.81 | 27.59 |
| AT1G70030.1 | Thale cress | cytosol | 19.82 | 27.5 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 14.41 | 26.23 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 15.77 | 25.18 |
| AT1G24200.1 | Thale cress | cytosol | 22.07 | 25.0 |
| AT5G35610.1 | Thale cress | cytosol | 16.22 | 23.23 |
| AT1G27250.1 | Thale cress | nucleus | 13.06 | 21.17 |
| AT1G27220.1 | Thale cress | nucleus | 13.06 | 15.76 |
| AT1G24220.1 | Thale cress | nucleus | 51.8 | 15.46 |
| VIT_17s0000g07540.t01 | Wine grape | nucleus | 12.16 | 14.52 |
| AT1G59890.2 | Thale cress | nucleus | 25.23 | 4.8 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 22.97 | 4.35 |
| AT1G24190.3 | Thale cress | nucleus | 25.23 | 4.19 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 25.68 | 4.15 |
| AT1G70060.2 | Thale cress | nucleus | 24.77 | 4.15 |
| AT5G15020.1 | Thale cress | nucleus | 25.23 | 4.1 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:839614 | ProteinID:AEE30799.1 | ArrayExpress:AT1G27260 | EnsemblPlantsGene:AT1G27260 |
| RefSeq:AT1G27260 | TAIR:AT1G27260 | RefSeq:AT1G27260-TAIR-G | EnsemblPlants:AT1G27260.1 | TAIR:AT1G27260.1 | Unigene:At.51786 |
| UniProt:F4HR62 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 |
| InterPro:IPR003822 | RefSeq:NP_174045.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF0 | SUPFAM:SSF47762 | UniParc:UPI0000162EDE | : | : |
Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HR62]
Coordinates
chr1:+:9469948..9470967
Molecular Weight (calculated)
25374.7 Da
IEP (calculated)
7.096
GRAVY (calculated)
-0.141
Length
222 amino acids
Sequence
(BLAST)
(BLAST)
001: MNKAFAYIIA VRDRFRDEPA KYRQFLSLLR DRRARRIDKA TFFVGLVELI KDHLDLLLGF NALLPARFQI PITPAGFQNV VGRSVPPETT IEDATSYLNS
101: VKRAFHDEPA KYEELLKLLN DIEARRVDAA SFIASVEELM KDHQTLLNGF SVFLSAEMKF IRKLKAKFQG DGSHVADSVL QILRMYSEGN KSKSEAFQEV
201: VPLVQDHEDL VMELIKIIFS DP
101: VKRAFHDEPA KYEELLKLLN DIEARRVDAA SFIASVEELM KDHQTLLNGF SVFLSAEMKF IRKLKAKFQG DGSHVADSVL QILRMYSEGN KSKSEAFQEV
201: VPLVQDHEDL VMELIKIIFS DP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.