Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY23529 | Canola | cytosol | 53.12 | 53.8 |
| CDY48380 | Canola | cytosol | 51.25 | 51.9 |
| AT1G24200.1 | Thale cress | cytosol | 47.5 | 38.78 |
| AT5G35610.1 | Thale cress | cytosol | 36.25 | 37.42 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 20.0 | 36.78 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 26.88 | 35.25 |
| AT1G24210.1 | Thale cress | cytosol | 28.75 | 29.68 |
| AT1G27240.1 | Thale cress | cytosol | 29.38 | 25.27 |
| AT1G24230.1 | Thale cress | cytosol | 34.38 | 22.45 |
| Os05t0100500-01 | Rice | plastid | 50.62 | 22.01 |
| AT1G27250.1 | Thale cress | nucleus | 18.75 | 21.9 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 18.75 | 21.58 |
| AT1G27280.1 | Thale cress | cytosol | 28.12 | 20.0 |
| AT1G27270.1 | Thale cress | cytosol | 30.0 | 19.92 |
| AT1G24250.1 | Thale cress | cytosol | 31.25 | 19.84 |
| AT1G27260.1 | Thale cress | cytosol | 27.5 | 19.82 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 28.75 | 19.09 |
| AT1G27220.1 | Thale cress | nucleus | 19.38 | 16.85 |
| Zm00001d041450_P002 | Maize | nucleus | 41.88 | 8.52 |
| AT1G59890.2 | Thale cress | nucleus | 53.75 | 7.37 |
| AT1G24220.1 | Thale cress | nucleus | 33.75 | 7.26 |
| AT1G70060.2 | Thale cress | nucleus | 59.38 | 7.16 |
| KRH74716 | Soybean | nucleus | 58.12 | 7.07 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 58.12 | 6.94 |
| AT1G24190.3 | Thale cress | nucleus | 57.5 | 6.88 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 58.12 | 6.66 |
| AT5G15020.1 | Thale cress | nucleus | 56.88 | 6.66 |
| KRH69432 | Soybean | nucleus | 59.38 | 6.64 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 56.25 | 6.56 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 59.38 | 6.55 |
| GSMUA_Achr11P... | Banana | nucleus | 56.25 | 6.53 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 47.5 | 6.48 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 52.5 | 6.48 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 55.0 | 6.46 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 53.12 | 6.39 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 54.38 | 6.31 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 52.5 | 6.31 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 52.5 | 6.25 |
| TraesCSU01G039900.1 | Wheat | nucleus | 54.38 | 6.09 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 54.38 | 6.07 |
| Zm00001d041453_P001 | Maize | nucleus | 41.88 | 5.8 |
| EES00449 | Sorghum | nucleus | 51.88 | 5.76 |
| Zm00001d040123_P007 | Maize | nucleus | 51.25 | 5.71 |
| Zm00001d008429_P019 | Maize | nucleus | 51.25 | 5.68 |
| HORVU3Hr1G000540.2 | Barley | plastid | 54.38 | 5.65 |
| Zm00001d035776_P004 | Maize | nucleus | 42.5 | 5.39 |
| KXG20992 | Sorghum | nucleus | 40.62 | 5.21 |
| Os01t0109700-01 | Rice | nucleus | 40.0 | 4.83 |
| AT1G10250.1 | Thale cress | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | EntrezGene:843340 | ProteinID:AEE35010.1 | EMBL:AK229700 | ArrayExpress:AT1G70030 |
| EnsemblPlantsGene:AT1G70030 | RefSeq:AT1G70030 | TAIR:AT1G70030 | RefSeq:AT1G70030-TAIR-G | EnsemblPlants:AT1G70030.1 | TAIR:AT1G70030.1 |
| EMBL:BT006143 | EMBL:BT008545 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 |
| GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR003822 | RefSeq:NP_177161.2 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PO:PO:0000293 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 |
| UniProt:Q84R24 | SUPFAM:SSF47762 | UniParc:UPI000018CEF8 | : | : | : |
Description
Paired amphipathic helix (PAH2) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q84R24]
Coordinates
chr1:+:26378641..26380379
Molecular Weight (calculated)
18724.3 Da
IEP (calculated)
6.516
GRAVY (calculated)
-0.401
Length
160 amino acids
Sequence
(BLAST)
(BLAST)
001: MVANKKLTTT DALDFLHLVK TKYQDNREIY DSFLTIMKDF RGQRAKTCDV ISKVKELFKG QPELLLGFNT FLPTGFEITL SDDELTSNSK FAHFDEAYEF
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
101: VNKVKTRFQN NDVFNSFLEV LKTHKKENKS VAELYQEVAI LFQGHRDLLE EFHLFLPHYG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.