Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH69432 | Soybean | nucleus | 95.29 | 87.62 |
| KRH45772 | Soybean | nucleus | 74.37 | 70.11 |
| KRG99216 | Soybean | nucleus | 73.46 | 69.95 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 74.98 | 67.95 |
| CDY23529 | Canola | cytosol | 7.91 | 65.82 |
| CDY48380 | Canola | cytosol | 7.76 | 64.56 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 59.54 | 58.39 |
| AT1G70030.1 | Thale cress | cytosol | 7.07 | 58.12 |
| KRH45776 | Soybean | nucleus | 40.68 | 58.03 |
| KRH18559 | Soybean | nucleus | 20.68 | 57.87 |
| AT1G24200.1 | Thale cress | cytosol | 8.59 | 57.65 |
| CDY23528 | Canola | cytosol | 6.77 | 57.42 |
| CDY48381 | Canola | cytosol | 6.77 | 57.42 |
| Bra003968.1-P | Field mustard | cytosol | 6.77 | 57.42 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 60.15 | 56.66 |
| Os05t0100500-01 | Rice | plastid | 15.67 | 55.98 |
| AT1G70060.2 | Thale cress | nucleus | 55.74 | 55.28 |
| CDY11625 | Canola | nucleus | 53.92 | 54.96 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 56.58 | 54.63 |
| CDY38781 | Canola | nucleus | 53.54 | 54.62 |
| Bra016241.1-P | Field mustard | nucleus | 53.46 | 54.54 |
| CDX68358 | Canola | nucleus | 53.16 | 54.44 |
| CDY23527 | Canola | nucleus | 53.16 | 54.02 |
| KRG99215 | Soybean | cytosol | 5.63 | 54.01 |
| GSMUA_Achr11P... | Banana | nucleus | 56.43 | 53.85 |
| Zm00001d008429_P019 | Maize | nucleus | 58.86 | 53.64 |
| EES00449 | Sorghum | nucleus | 58.4 | 53.3 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 52.55 | 53.28 |
| Bra003967.1-P | Field mustard | nucleus | 53.16 | 53.16 |
| Zm00001d040123_P007 | Maize | nucleus | 57.95 | 53.1 |
| Os01t0109700-01 | Rice | nucleus | 53.38 | 52.94 |
| AT1G24190.3 | Thale cress | nucleus | 53.76 | 52.84 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 53.38 | 52.7 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 53.23 | 52.59 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 53.31 | 52.12 |
| KRG93437 | Soybean | nucleus | 54.14 | 50.78 |
| TraesCSU01G039900.1 | Wheat | nucleus | 54.98 | 50.59 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 55.06 | 50.49 |
| KRH45778 | Soybean | cytosol | 24.26 | 50.08 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 52.47 | 50.04 |
| KRH18561 | Soybean | nucleus | 33.61 | 49.0 |
| KXG20992 | Sorghum | nucleus | 45.93 | 48.4 |
| Zm00001d035776_P004 | Maize | nucleus | 44.87 | 46.79 |
| HORVU3Hr1G000540.2 | Barley | plastid | 54.37 | 46.4 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 5.93 | 36.11 |
| Zm00001d041450_P002 | Maize | nucleus | 19.92 | 33.33 |
| Zm00001d041453_P001 | Maize | nucleus | 23.27 | 26.49 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | UniProt:A0A0R0L652 | EMBL:ACUP02000063 | EMBL:ACUP02000064 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_01G038300 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom |
| InterPro:IPR003822 | EnsemblPlants:KRH74716 | ProteinID:KRH74716 | ProteinID:KRH74716.1 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 |
| SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI0006ED7FE1 | SEG:seg | : |
Description
hypothetical protein
Coordinates
chr1:-:4045495..4057535
Molecular Weight (calculated)
150361.0 Da
IEP (calculated)
6.181
GRAVY (calculated)
-0.814
Length
1315 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRSRDEVLT SCSQLKRPVL SSRGEASGQP QMMNGGAQKL TTNDALAYLK AVKDIFQDKR DKYDDFLEVM KDFKAQRIDT VGVIARVKEL FKGHRDLILG
0101: FNTFLPKGYE ITLPSEDDQP APKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KEDKSITEVY QEVAAIFQDH PDLLDEFTHF LPDASAAAST
0201: HYASARNSML RDRSSAMPTI RQLHVEKRER TIVSHGDHDP SVDRPDPDHD RGLLRIEKER RRVEKEKERR EDRDKRERER DDRDYEHDGA RDRERFSHKR
0301: NRKAEDSGAE PLLDADENFG VRPMSSTCDD KNSLKSMYSQ EFAFCEKVKE KLRNPDDYQE FLKCLHIYSR EIITRHELQS LVGDLLGKYP DLMEGFNEFL
0401: LQSEKNDGGF LAGVMNKKSL WNDGHGLKQI KVEDKDRDQD RDRDRYRDDG MKERDREFRE RDKSTAIANK DVLGSKMSLY PSKEKYLSKP INELDLSNCD
0501: QCTPSYRLLP KNYPIPVASQ KTELGAEVLN DYWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNVTTKR VEELLDKINS NIIKGDSPIR
0601: IEEHLTAINL RCIERLYGDH GLDVMEVLRK NAPLALPVIL TRLKQKQEEW ARCRADFSKV WGEIYAKNYH KSLDHRSFYF KQQDTKSLST KALLAEIKEI
0701: CEKKRKDDVL LAIAAGNRRP ILPNLEFKYS DPDIHEDLYQ LIKYSCGEIC TTEHVDKVMK VWTTFLEPML CIPSRPQCAE DTEDVVKVKN NCVLNDTATV
0801: AESDCSPVVG ATIMNPKHIN VSRNGDECMP LDQSTSSKAW QSNGDSGVRE DRYLDDHALR KTETLGSNTQ HGKMNSIAFT PDEPSGFNNK QDQSSERLVN
0901: ANVSPASGME QSNGRTNIDN LSGLTATPTR PGNASVEGGL DIPSSEGGDS TRLGTSTNGA ITGGTKVHRY QEESVRPFKN EREEGELSPN GDFEEDNFAF
1001: YGGNGLDAVH KGKDGGVSRQ YQNRHGEEVC GETRGENDAD AETLYERIQS AKINSSSADR KWKASSDTSS TDQYDRFMNA LYSLLDGSSD NTKFEDDCRA
1101: IIGIQSYVLF TLDKLIYKLV KQLQAVAADE MDNKLLQLYA YEKSRKPGKF VDIVYHENAR VLLHDENIYR IEYSPGPMKL SIQLMDSGHD KPEVTAVSMD
1201: PNFSTYLHYD FLSVVSDKKQ KSGIFLKRNK RRYASNDEFS SQAMEGLQII NGLECKIACS SSKVSYVLDT EDFLFRIRRK RRALRLKSSG AHEQAQSSNI
1301: CSSRVQRFRN LFSIT
0101: FNTFLPKGYE ITLPSEDDQP APKKPVEFEE AINFVNKIKT RFQGDDHVYK SFLDILNMYR KEDKSITEVY QEVAAIFQDH PDLLDEFTHF LPDASAAAST
0201: HYASARNSML RDRSSAMPTI RQLHVEKRER TIVSHGDHDP SVDRPDPDHD RGLLRIEKER RRVEKEKERR EDRDKRERER DDRDYEHDGA RDRERFSHKR
0301: NRKAEDSGAE PLLDADENFG VRPMSSTCDD KNSLKSMYSQ EFAFCEKVKE KLRNPDDYQE FLKCLHIYSR EIITRHELQS LVGDLLGKYP DLMEGFNEFL
0401: LQSEKNDGGF LAGVMNKKSL WNDGHGLKQI KVEDKDRDQD RDRDRYRDDG MKERDREFRE RDKSTAIANK DVLGSKMSLY PSKEKYLSKP INELDLSNCD
0501: QCTPSYRLLP KNYPIPVASQ KTELGAEVLN DYWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNVTTKR VEELLDKINS NIIKGDSPIR
0601: IEEHLTAINL RCIERLYGDH GLDVMEVLRK NAPLALPVIL TRLKQKQEEW ARCRADFSKV WGEIYAKNYH KSLDHRSFYF KQQDTKSLST KALLAEIKEI
0701: CEKKRKDDVL LAIAAGNRRP ILPNLEFKYS DPDIHEDLYQ LIKYSCGEIC TTEHVDKVMK VWTTFLEPML CIPSRPQCAE DTEDVVKVKN NCVLNDTATV
0801: AESDCSPVVG ATIMNPKHIN VSRNGDECMP LDQSTSSKAW QSNGDSGVRE DRYLDDHALR KTETLGSNTQ HGKMNSIAFT PDEPSGFNNK QDQSSERLVN
0901: ANVSPASGME QSNGRTNIDN LSGLTATPTR PGNASVEGGL DIPSSEGGDS TRLGTSTNGA ITGGTKVHRY QEESVRPFKN EREEGELSPN GDFEEDNFAF
1001: YGGNGLDAVH KGKDGGVSRQ YQNRHGEEVC GETRGENDAD AETLYERIQS AKINSSSADR KWKASSDTSS TDQYDRFMNA LYSLLDGSSD NTKFEDDCRA
1101: IIGIQSYVLF TLDKLIYKLV KQLQAVAADE MDNKLLQLYA YEKSRKPGKF VDIVYHENAR VLLHDENIYR IEYSPGPMKL SIQLMDSGHD KPEVTAVSMD
1201: PNFSTYLHYD FLSVVSDKKQ KSGIFLKRNK RRYASNDEFS SQAMEGLQII NGLECKIACS SSKVSYVLDT EDFLFRIRRK RRALRLKSSG AHEQAQSSNI
1301: CSSRVQRFRN LFSIT
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.