CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG99215	Soybean	cytosol	17.9	83.21
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	6.91	48.89
CDY14679	Canola	cytosol, mitochondrion, nucleus	6.91	48.89
CDY16234	Canola	cytosol, mitochondrion, nucleus	6.91	48.89
Bra012419.1-P	Field mustard	cytosol	6.28	46.51
CDY40291	Canola	cytoskeleton, cytosol, nucleus	6.28	46.51
CDY28457	Canola	cytoskeleton, cytosol, nucleus	6.12	46.43
AT1G27250.1	Thale cress	nucleus	8.01	37.23
KRH18559	Soybean	nucleus	24.33	32.98
KRH45776	Soybean	nucleus	45.68	31.56
AT1G27220.1	Thale cress	nucleus	8.95	30.98
KRH18551	Soybean	cytosol, nucleus, peroxisome	9.11	26.85
KRH74716	Soybean	nucleus	50.08	24.26
KRH69432	Soybean	nucleus	50.08	22.31
KRH45772	Soybean	nucleus	48.82	22.29
KRG99216	Soybean	nucleus	47.57	21.94
KRG93437	Soybean	nucleus	40.5	18.4
KRH18561	Soybean	nucleus	15.86	11.2

Protein Annotations

Gene3D:1.20.1160.11	EntrezGene:100782878	MapMan:12.3.2.4.2	EMBL:ACUP02005285	ncoils:Coil	EnsemblPlantsGene:GLYMA_08G293100
GO:GO:0000118	GO:GO:0000122	GO:GO:0000785	GO:GO:0001106	GO:GO:0003674	GO:GO:0003824
GO:GO:0004407	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654
GO:GO:0006139	GO:GO:0006355	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	InterPro:HDAC_interact_dom
InterPro:IPR003822	UniProt:K7L9N8	EnsemblPlants:KRH45778	ProteinID:KRH45778	ProteinID:KRH45778.1	InterPro:PAH
InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295	PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF0
SMART:SM00761	SUPFAM:SSF47762	UniParc:UPI00029671AB	:	:	:

Description

hypothetical protein

Coordinates

chr8:-:40795053..40799667

Molecular Weight (calculated)

74381.0 Da

IEP (calculated)

8.990

GRAVY (calculated)

-0.748

Length

637 amino acids

Sequence
(BLAST)

001: MINFFNDIYT FYEIFCMNSC QPLVNGRGAK KQRPMTDSAL AYLTTVKDAF KDDREKYDKF LELVKNFTAE RFNLVRGIEE VKELLKGYRD LILGFNVFLP
101: KGYEIKLPLE DEQPPEKKLD VFVKAKKLLH KIKARFHGQD NVYKTFLAIL KMHKDGTKSP TAAYGEITAL LQHHADLLNE LPFLSLNTSR TISIHFTSAQ
201: NSLFREKSSA VPIVQQMCVL KRKRTKTSHD DHNHIVGHRL ESDWSEREKD NRDYYQDGIQ KLLSLKRTHF CMAEDLMARS FCNVDKHFGM HPMPSTCYDQ
301: SSMKSSERFS FCAKIKDKLQ NPKNYFSKHV DIYSKEKTTR QELPSSTTDF PRKFPDLMKG FNECVTQCKK MNESSRDEEH VQKQIKLEDW NRDRHHDGDD
401: RVKETVSDCR KRDKSTVVAN KNVSGRKLSL YASKKKNSAK SVRELDLSIC EKCTPSYYLL PKEFQIPSSS RRTKLDAEVL NDHWKCVAPS IKDYSSKHMS
501: KNLNEMTLFE CEDDRIELDM CLETAKSTTK QVEELIEKIN TNMIERDNPI NIEKHLIAQN LRCIEQLYGD HGIDVLDVLR KNASQVLPVI LTRLKQKHEE
601: WARCRADLNK LWAEVYAKNY HKSLNHDRVP STRNQEL

Best Arabidopsis Sequence Match ( AT1G24190.1 )
(BLAST)

0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL

Arabidopsis Description

SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.