CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	31.39	47.78
CDY14679	Canola	cytosol, mitochondrion, nucleus	31.39	47.78
CDY16234	Canola	cytosol, mitochondrion, nucleus	31.39	47.78
Bra012419.1-P	Field mustard	cytosol	29.2	46.51
CDY40291	Canola	cytoskeleton, cytosol, nucleus	29.2	46.51
CDY28457	Canola	cytoskeleton, cytosol, nucleus	28.47	46.43
AT1G27250.1	Thale cress	nucleus	28.47	28.47
AT1G27220.1	Thale cress	nucleus	29.93	22.28
KRH18551	Soybean	cytosol, nucleus, peroxisome	29.93	18.98
KRH45778	Soybean	cytosol	83.21	17.9
KRH18559	Soybean	nucleus	48.18	14.04
KRH45776	Soybean	nucleus	51.09	7.59
KRH74716	Soybean	nucleus	54.01	5.63
KRH45772	Soybean	nucleus	56.93	5.59
KRG99216	Soybean	nucleus	55.47	5.5
KRH69432	Soybean	nucleus	54.01	5.17
KRG93437	Soybean	nucleus	49.63	4.85
KRH18561	Soybean	nucleus	1.46	0.22

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EMBL:ACUP02011006	EnsemblPlantsGene:GLYMA_18G130300	GO:GO:0000118	GO:GO:0000122
GO:GO:0000785	GO:GO:0001106	GO:GO:0003674	GO:GO:0003824	GO:GO:0004407	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139	GO:GO:0006355
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016575	GO:GO:0016787	GO:GO:0019538	InterPro:IPR003822	UniProt:K7MRS0	EnsemblPlants:KRG99215
ProteinID:KRG99215	ProteinID:KRG99215.1	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFscan:PS51477
PANTHER:PTHR12346	PANTHER:PTHR12346:SF8	SUPFAM:SSF47762	UniParc:UPI0002968625	:	:

Description

hypothetical protein

Coordinates

chr18:+:18041444..18042727

Molecular Weight (calculated)

16122.7 Da

IEP (calculated)

9.761

GRAVY (calculated)

-0.395

Length

137 amino acids

Sequence
(BLAST)

001: MADSALAYLS TVKDAFKDDR EKFDKFLELM KNFTADRFNL VSGIEEVKEL LKGHRDLIFG FNVFLPKGFE IKLPLEDEQP PQKKLDVFVE AKKIMHKIET
101: RFHGQDNVYK AFLAILKMHK DGNRTPLQLT RRTMWIF

Best Arabidopsis Sequence Match ( AT1G24190.1 )
(BLAST)

0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL

Arabidopsis Description

SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.