Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytoskeleton 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY14679 | Canola | cytosol, mitochondrion, nucleus | 36.96 | 75.56 |
| CDY16234 | Canola | cytosol, mitochondrion, nucleus | 36.96 | 75.56 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 36.96 | 75.56 |
| AT1G27250.1 | Thale cress | nucleus | 35.33 | 47.45 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 17.93 | 37.93 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 20.11 | 30.33 |
| KRG99215 | Soybean | cytosol | 22.28 | 29.93 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 17.93 | 23.74 |
| AT1G24210.1 | Thale cress | cytosol | 17.39 | 20.65 |
| AT1G24200.1 | Thale cress | cytosol | 20.65 | 19.39 |
| AT1G70030.1 | Thale cress | cytosol | 16.85 | 19.38 |
| AT5G35610.1 | Thale cress | cytosol | 16.3 | 19.35 |
| AT1G27280.1 | Thale cress | cytosol | 19.57 | 16.0 |
| AT1G27240.1 | Thale cress | cytosol | 15.76 | 15.59 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 17.39 | 13.28 |
| AT1G24250.1 | Thale cress | cytosol | 17.93 | 13.1 |
| AT1G27260.1 | Thale cress | cytosol | 15.76 | 13.06 |
| AT1G27270.1 | Thale cress | cytosol | 16.3 | 12.45 |
| AT1G24230.1 | Thale cress | cytosol | 14.67 | 11.02 |
| KRH45778 | Soybean | cytosol | 30.98 | 8.95 |
| AT1G70060.2 | Thale cress | nucleus | 42.39 | 5.88 |
| AT1G24190.3 | Thale cress | nucleus | 41.85 | 5.75 |
| AT1G59890.2 | Thale cress | nucleus | 35.33 | 5.57 |
| AT5G15020.1 | Thale cress | nucleus | 41.3 | 5.56 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 33.7 | 5.29 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 39.13 | 5.25 |
| AT1G24220.1 | Thale cress | nucleus | 17.93 | 4.44 |
| AT1G10250.1 | Thale cress | cytosol | 1.63 | 3.9 |
Protein Annotations
| Gene3D:1.20.1160.11 | Gene3D:3.30.420.10 | MapMan:35.1 | EntrezGene:839611 | UniProt:A0A178WEW4 | ProteinID:AEE30796.1 |
| ArrayExpress:AT1G27220 | EnsemblPlantsGene:AT1G27220 | RefSeq:AT1G27220 | TAIR:AT1G27220 | RefSeq:AT1G27220-TAIR-G | EnsemblPlants:AT1G27220.1 |
| TAIR:AT1G27220.1 | Unigene:At.51783 | UniProt:F4HR59 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 |
| GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:IPR003822 | InterPro:IPR036397 |
| RefSeq:NP_174042.1 | ProteinID:OAP15562.1 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF13456 |
| PO:PO:0000084 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF0 | InterPro:RNaseH-like_sf | InterPro:RNaseH_sf |
| SUPFAM:SSF47762 | SUPFAM:SSF53098 | UniParc:UPI0000162EDD | SEG:seg | : | : |
Description
Paired amphipathic helix repeat-containing protein [Source:UniProtKB/TrEMBL;Acc:F4HR59]
Coordinates
chr1:+:9463806..9465444
Molecular Weight (calculated)
21360.5 Da
IEP (calculated)
9.053
GRAVY (calculated)
-0.523
Length
184 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGEGSKPKA TVDDAYAYIR TVKSTFHNDP DKYDDFMAIM KNFKARKIDR NTCIEEVKEL LKGHRDLISG FNAFLPKCLE IADWYNIEVL EAELQALLMA
101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR
101: MQHTWSKGYR KIIFEGDNRT VESLLNGNTR NFELHNLIIE IQHWRKKFSN AIIKWSFRST NKAADRLAKG ELENNVTFVS HSTR
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.