Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11625 | Canola | nucleus | 81.07 | 83.33 |
| CDY38781 | Canola | nucleus | 80.32 | 82.62 |
| Bra016241.1-P | Field mustard | nucleus | 80.32 | 82.62 |
| CDY23527 | Canola | nucleus | 79.49 | 81.45 |
| CDX68358 | Canola | nucleus | 78.81 | 81.39 |
| Bra003967.1-P | Field mustard | nucleus | 78.96 | 79.62 |
| AT1G10250.1 | Thale cress | cytosol | 4.0 | 68.83 |
| AT1G24190.3 | Thale cress | nucleus | 69.38 | 68.76 |
| AT1G70030.1 | Thale cress | cytosol | 7.16 | 59.38 |
| AT1G24200.1 | Thale cress | cytosol | 8.75 | 59.18 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 61.69 | 56.37 |
| KRH69432 | Soybean | nucleus | 60.71 | 56.29 |
| KRH74716 | Soybean | nucleus | 55.28 | 55.74 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 53.77 | 53.17 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 49.92 | 51.04 |
| Os01t0109700-01 | Rice | nucleus | 50.45 | 50.45 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 50.68 | 50.45 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 50.53 | 50.34 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 50.53 | 49.81 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 52.41 | 49.79 |
| EES00449 | Sorghum | nucleus | 52.87 | 48.65 |
| GSMUA_Achr11P... | Banana | nucleus | 50.53 | 48.62 |
| Zm00001d008429_P019 | Maize | nucleus | 52.79 | 48.51 |
| Zm00001d040123_P007 | Maize | nucleus | 52.41 | 48.43 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 49.62 | 48.31 |
| TraesCSU01G039900.1 | Wheat | nucleus | 51.81 | 48.08 |
| AT5G35610.1 | Thale cress | cytosol | 5.58 | 47.74 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 51.58 | 47.7 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 49.55 | 47.64 |
| AT1G59890.2 | Thale cress | nucleus | 41.7 | 47.39 |
| Os05t0100500-01 | Rice | plastid | 13.05 | 47.01 |
| KXG20992 | Sorghum | nucleus | 43.82 | 46.55 |
| AT5G15025.1 | Thale cress | cytosol, nucleus, peroxisome | 4.22 | 45.9 |
| AT5G15020.1 | Thale cress | nucleus | 47.21 | 45.79 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 47.29 | 45.7 |
| Zm00001d035776_P004 | Maize | nucleus | 43.14 | 45.36 |
| HORVU3Hr1G000540.2 | Barley | plastid | 51.36 | 44.19 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 38.61 | 43.65 |
| AT5G15040.2 | Thale cress | cytoskeleton, cytosol, nucleus | 2.79 | 42.53 |
| AT1G27220.1 | Thale cress | nucleus | 5.88 | 42.39 |
| AT1G27250.1 | Thale cress | nucleus | 4.3 | 41.61 |
| AT1G24210.1 | Thale cress | cytosol | 4.15 | 35.48 |
| AT1G27240.1 | Thale cress | cytosol | 4.3 | 30.65 |
| AT5G15030.1 | Thale cress | endoplasmic reticulum | 3.17 | 30.22 |
| Zm00001d041450_P002 | Maize | nucleus | 17.8 | 30.03 |
| AT1G24250.1 | Thale cress | cytosol | 4.75 | 25.0 |
| AT1G27280.1 | Thale cress | cytosol | 4.22 | 24.89 |
| AT1G27260.1 | Thale cress | cytosol | 4.15 | 24.77 |
| AT1G24230.1 | Thale cress | cytosol | 4.52 | 24.49 |
| Zm00001d041453_P001 | Maize | nucleus | 21.19 | 24.33 |
| AT1G23810.1 | Thale cress | cytosol, nucleus, peroxisome | 4.37 | 24.07 |
| AT1G27270.1 | Thale cress | cytosol | 4.22 | 23.24 |
| AT1G24220.1 | Thale cress | nucleus | 4.98 | 8.87 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EntrezGene:843342 | ProteinID:AAB61107.1 | ProteinID:AEE35012.1 | ProteinID:ANM60804.1 |
| ArrayExpress:AT1G70060 | EnsemblPlantsGene:AT1G70060 | RefSeq:AT1G70060 | TAIR:AT1G70060 | RefSeq:AT1G70060-TAIR-G | EnsemblPlants:AT1G70060.2 |
| Unigene:At.10309 | GO:GO:0000118 | GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0004407 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 |
| GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | RefSeq:NP_001323064.1 | RefSeq:NP_177163.3 | UniProt:O04539 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | Symbol:SNL4 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI0001E92A8E | SEG:seg | : | : | : | : |
Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
Coordinates
chr1:+:26383440..26389916
Molecular Weight (calculated)
150799.0 Da
IEP (calculated)
5.211
GRAVY (calculated)
-0.789
Length
1326 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.