Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX68358 | Canola | nucleus | 97.19 | 99.53 |
| CDY23527 | Canola | nucleus | 92.85 | 94.36 |
| Bra016241.1-P | Field mustard | nucleus | 83.19 | 84.87 |
| AT1G70060.2 | Thale cress | nucleus | 79.62 | 78.96 |
| Bra003968.1-P | Field mustard | cytosol | 7.22 | 61.29 |
| VIT_01s0026g01010.t01 | Wine grape | nucleus | 60.0 | 54.38 |
| KRH69432 | Soybean | nucleus | 58.02 | 53.36 |
| KRH74716 | Soybean | nucleus | 53.16 | 53.16 |
| GSMUA_Achr1P20690_001 | Banana | nucleus | 52.93 | 51.9 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.5 | 51.11 |
| Bra027831.1-P | Field mustard | nucleus | 28.67 | 50.54 |
| Bra017891.1-P | Field mustard | nucleus | 37.57 | 50.41 |
| TraesCS1B01G002000.1 | Wheat | nucleus | 49.05 | 49.73 |
| Bra019933.1-P | Field mustard | nucleus | 38.25 | 49.51 |
| Bra035418.1-P | Field mustard | nucleus | 41.6 | 49.41 |
| GSMUA_Achr9P00800_001 | Banana | nucleus | 52.17 | 49.14 |
| Os01t0109700-01 | Rice | nucleus | 49.43 | 49.02 |
| TraesCS1A01G002700.1 | Wheat | nucleus | 49.58 | 48.95 |
| HORVU1Hr1G000290.3 | Barley | nucleus | 49.51 | 48.91 |
| Bra012419.1-P | Field mustard | cytosol | 3.19 | 48.84 |
| TraesCS1D01G004900.4 | Wheat | nucleus | 49.66 | 48.55 |
| GSMUA_Achr2P09580_001 | Banana | nucleus | 49.73 | 48.02 |
| GSMUA_Achr11P... | Banana | nucleus | 50.11 | 47.82 |
| EES00449 | Sorghum | nucleus | 51.56 | 47.05 |
| Zm00001d008429_P019 | Maize | nucleus | 51.56 | 46.99 |
| Zm00001d040123_P007 | Maize | nucleus | 51.25 | 46.97 |
| TraesCSU01G039900.1 | Wheat | nucleus | 50.34 | 46.33 |
| KXG20992 | Sorghum | nucleus | 43.95 | 46.31 |
| Bra006276.1-P | Field mustard | nucleus | 47.3 | 46.21 |
| TraesCS3B01G005900.1 | Wheat | nucleus | 50.11 | 45.96 |
| TraesCS3D01G007600.2 | Wheat | nucleus, plastid | 47.98 | 45.76 |
| Zm00001d035776_P004 | Maize | nucleus | 42.89 | 44.73 |
| Bra023501.1-P | Field mustard | nucleus | 45.32 | 44.61 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 44.26 | 43.27 |
| Os05t0100500-01 | Rice | plastid | 12.09 | 43.21 |
| Bra037066.1-P | Field mustard | nucleus | 9.13 | 43.17 |
| HORVU3Hr1G000540.2 | Barley | plastid | 50.11 | 42.76 |
| Bra037065.1-P | Field mustard | nucleus | 7.83 | 42.74 |
| Bra008727.1-P | Field mustard | cytosol | 11.94 | 39.75 |
| Bra007893.1-P | Field mustard | cytosol | 2.05 | 33.75 |
| Zm00001d041450_P002 | Maize | nucleus | 18.02 | 30.15 |
| Zm00001d041453_P001 | Maize | nucleus | 21.14 | 24.07 |
| Bra007894.1-P | Field mustard | nucleus | 7.15 | 22.33 |
| Bra024644.1-P | Field mustard | mitochondrion | 4.33 | 16.96 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra003967 | EnsemblPlants:Bra003967.1 | EnsemblPlants:Bra003967.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M4CID4 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI0002541906 | SEG:seg | : | : | : | : |
Description
AT1G24190 (E=0.0) SIN3, ATSIN3, SNL3 | SNL3 (SIN3-LIKE 3); transcription repressor
Coordinates
chrA07:-:16008356..16013728
Molecular Weight (calculated)
149230.0 Da
IEP (calculated)
4.948
GRAVY (calculated)
-0.752
Length
1315 amino acids
Sequence
(BLAST)
(BLAST)
0001: MVGGGGSAQK LTTNDALAYL KAVKDKFADK REKYDEFLEV MKDFKAQRVD TSGVILRVKE LFKGNRELIL GFNTFLPKGF EITLLPEEDD QPPPKKPVEF
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TIRDSDKVPP
0201: SLEVICELML DMLLDILYSE LSLVCALLQK DRINDLKTEH MELDQERSLL KESKEDVRRI DKKNDYTDDQ KGQFLHSKKK LTLRDEDSTE TSNQGREGDK
0301: FCGAIATSST KDDKGHVQEL AFVDRVKAKL SSSGYQEFLR CLNLFSKEII SQPELQSLVG NLIGGYPDLM EAFRVFLVQC EKNDGLLSSV VTKKSLWSDG
0401: KCPQPTKSQD KDTEREREKT ERLRERDREK ERLEKAAASQ KWAKPISELD LSNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF
0501: KHMRKNQYEE SLFRCEDDRF ELDMLLESVN SATNRVEELL AKINNNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVI DLLKKNAYLA LPVILTRLKQ
0601: KQEEWGRCRS EFNKVWADIY TKNYHRSLDH RSFYFKQQDS KNLSAKALLA EINEISEKKR GEDDALLALA AGNRRTICSS MSFDYPDPDL HEDLYQLIKY
0701: SCGEMCSTEQ LDKVMKVWTE FLEPMFGVPS RPQVAEDQED AIKTTTNQNL KTGDASEDSP QNGATVASTV RSNGPRKADR DFTASKSSDD NIQNDKMRKN
0801: LSTPEERPET KEAVTIERVH SSNSPPVDGL IPQRNGKTSV LSIVGLSNST PKPGGLTSGT EMESKPNHVN GTLAETSNNQ RSNEVSAGET KVEREEGELS
0901: PTGDFEEDNF AENDLDALSN GKDDAGNNLN QRSSGENDEG DESAPRSSDG SGNTSHNGDV SGTESGDGEQ DCYPEDDNKV ESEGEAEAEE GMSDAEGDRP
1001: VLPVYVRNLL HAKPLSKYVP PAILDKDNKD DSQKKNSIVF YGNDSYYVLF RLHQILYERI LSAKINSSCP ERMWKTSNST NPADSYARFM NALYNLLDGT
1101: SDNSKFEDDC RAIIGTQSYV LFTLDKLIYK LIKHLQVVAA DEMDSKLQQL YSYEKSRKPE KYLDDVYYEN ARVLLPDEDV YRIECELSAQ TTKLSIQLLD
1201: YGHDKPDVTS ISMDPTFTAY LQNKFLSSQA KVKENPRIYL NRNKRKNGDD DELCTTDGVK IINGLECKIT CSSSKVSYVF DTEDVLHRVK KRKVLSGSII
1301: RERRIQRYQK LLTSQ
0101: EEAISFVNKI KTRFQGDDRV YKSFLDILNM YRKENKSITE VYQEVAILFR DHHDLLVEFT HFLPDTSGTT STNDLVKMSV RDRGGFKSLP TIRDSDKVPP
0201: SLEVICELML DMLLDILYSE LSLVCALLQK DRINDLKTEH MELDQERSLL KESKEDVRRI DKKNDYTDDQ KGQFLHSKKK LTLRDEDSTE TSNQGREGDK
0301: FCGAIATSST KDDKGHVQEL AFVDRVKAKL SSSGYQEFLR CLNLFSKEII SQPELQSLVG NLIGGYPDLM EAFRVFLVQC EKNDGLLSSV VTKKSLWSDG
0401: KCPQPTKSQD KDTEREREKT ERLRERDREK ERLEKAAASQ KWAKPISELD LSNCEQCTPS YRLLPKNYPI PIASQKMEIG SQVLNDHWVS VTSGSEDYSF
0501: KHMRKNQYEE SLFRCEDDRF ELDMLLESVN SATNRVEELL AKINNNELKT DTPICIEDHL TALNIRCIER LYGDHGLDVI DLLKKNAYLA LPVILTRLKQ
0601: KQEEWGRCRS EFNKVWADIY TKNYHRSLDH RSFYFKQQDS KNLSAKALLA EINEISEKKR GEDDALLALA AGNRRTICSS MSFDYPDPDL HEDLYQLIKY
0701: SCGEMCSTEQ LDKVMKVWTE FLEPMFGVPS RPQVAEDQED AIKTTTNQNL KTGDASEDSP QNGATVASTV RSNGPRKADR DFTASKSSDD NIQNDKMRKN
0801: LSTPEERPET KEAVTIERVH SSNSPPVDGL IPQRNGKTSV LSIVGLSNST PKPGGLTSGT EMESKPNHVN GTLAETSNNQ RSNEVSAGET KVEREEGELS
0901: PTGDFEEDNF AENDLDALSN GKDDAGNNLN QRSSGENDEG DESAPRSSDG SGNTSHNGDV SGTESGDGEQ DCYPEDDNKV ESEGEAEAEE GMSDAEGDRP
1001: VLPVYVRNLL HAKPLSKYVP PAILDKDNKD DSQKKNSIVF YGNDSYYVLF RLHQILYERI LSAKINSSCP ERMWKTSNST NPADSYARFM NALYNLLDGT
1101: SDNSKFEDDC RAIIGTQSYV LFTLDKLIYK LIKHLQVVAA DEMDSKLQQL YSYEKSRKPE KYLDDVYYEN ARVLLPDEDV YRIECELSAQ TTKLSIQLLD
1201: YGHDKPDVTS ISMDPTFTAY LQNKFLSSQA KVKENPRIYL NRNKRKNGDD DELCTTDGVK IINGLECKIT CSSSKVSYVF DTEDVLHRVK KRKVLSGSII
1301: RERRIQRYQK LLTSQ
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.