Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX85568 | Canola | nucleus | 99.93 | 99.93 |
| Bra006276.1-P | Field mustard | nucleus | 84.43 | 83.8 |
| AT5G15020.1 | Thale cress | nucleus | 82.63 | 80.76 |
| KRH18559 | Soybean | nucleus | 23.8 | 67.66 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 68.04 | 67.58 |
| KRG93437 | Soybean | nucleus | 61.3 | 58.42 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 5.99 | 58.39 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 58.98 | 56.9 |
| Solyc02g087370.1.1 | Tomato | cytosol | 8.16 | 56.77 |
| Bra008727.1-P | Field mustard | cytosol | 16.77 | 56.71 |
| KRH18561 | Soybean | nucleus | 36.75 | 54.43 |
| Solyc02g087360.2.1 | Tomato | nucleus | 53.37 | 53.09 |
| Bra003968.1-P | Field mustard | cytosol | 6.14 | 52.9 |
| Solyc02g067570.2.1 | Tomato | nucleus | 53.37 | 52.89 |
| PGSC0003DMT400003538 | Potato | nucleus | 53.29 | 52.47 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.29 | 48.89 |
| Bra016241.1-P | Field mustard | nucleus | 44.76 | 46.39 |
| Bra035418.1-P | Field mustard | nucleus | 38.1 | 45.98 |
| Bra037066.1-P | Field mustard | nucleus | 9.51 | 45.68 |
| Bra012419.1-P | Field mustard | cytosol | 2.92 | 45.35 |
| Bra003967.1-P | Field mustard | nucleus | 44.61 | 45.32 |
| Bra037065.1-P | Field mustard | nucleus | 8.16 | 45.23 |
| Bra017891.1-P | Field mustard | nucleus | 32.93 | 44.9 |
| Bra019933.1-P | Field mustard | nucleus | 34.13 | 44.88 |
| Bra027831.1-P | Field mustard | nucleus | 24.7 | 44.24 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 16.02 | 41.8 |
| Solyc02g087390.1.1 | Tomato | cytosol | 14.9 | 39.1 |
| Bra007893.1-P | Field mustard | cytosol | 2.02 | 33.75 |
| Bra007894.1-P | Field mustard | nucleus | 7.56 | 23.99 |
| Bra024644.1-P | Field mustard | mitochondrion | 4.72 | 18.75 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra023501 | EnsemblPlants:Bra023501.1 | EnsemblPlants:Bra023501.1-P | ncoils:Coil |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:M4E3Z8 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 |
| PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C |
| UniParc:UPI00025435E6 | SEG:seg | : | : | : | : |
Description
AT5G15020 (E=0.0) SNL2 | SNL2 (SIN3-LIKE 2)
Coordinates
chrA02:-:3640875..3647007
Molecular Weight (calculated)
151885.0 Da
IEP (calculated)
5.110
GRAVY (calculated)
-0.804
Length
1336 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRMRDDVYS SGSQFKRSFG SSRRESYVQS PTPASGGTGG GGGRIGDGGV NSQKLTTHDA LSYLKDVKEM FQDQRDKYDM FLEVMKDFKA QRTDTSGVIE
0101: RVKELFKGHN NLIFGFNTFL PKGFEITLDD LEEEEAPPKK TVEFEEAITF VNKIKKRFQR DEDVYKSFLE ILNMYRKDDK DITEVYNEVS TLFEDHPDLL
0201: EEFTKFLPES LAPHSAAQLI RSQAQRYDDR GSGPPVVRRM ITDKDRRPRE RAVASRCDRD QSVDRSDLND DKAMVKMHRD PRKRVDKENR ERRSRDLDHG
0301: EAGQDNLHHF PEKRKSSRKT EEFEAYSGHA SHSEKNNLKG MYNQAFVFCE KVKEKLCSQD DYQTFLKFLN LFSSGIIHRK ELQNFVSDLL GKFPDLMDEF
0401: NQFFERCEST DSFQHLAGVM SKKSLSSDEH LSKPMKAEEK ERDDKRDLEA AKEKERSKEK YMEKSIQELD LSECERCTPS YRLLPSDYPI PSVRHRQKSV
0501: AAVLNDHWVS VTSGSEDSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEDLLN TIIEKKISFE GSFQVEDHFT ALNLRCIERL YGDHGLDVTD
0601: LIRKNPAAAL PVILTRLKQK QDEWTKCRED FNVVWKDVYA KNHYKSLDHR SFYFKQQDSK NFSAKALVTE IKDLKEKSQI EDDVPLSISA GYRQPIVPHF
0701: EYEYFDRTIP EDLFKLVQFS CEEICSSKEQ ISKVLRLWNS FLELMLGVPP RAKGSDSVED VAETKHPVTN GEANVSSDAV SLVSRQLKFA ANGDEYASSG
0801: VSKHAGDGLL NRDSSAKENC KDVDQASKDA ATCSAVKPQK DLEIGNGANK RSGDDERVAI TSASFPSGVE NKNDNIDAIQ RTQVGDIGRT IAIANGVQPD
0901: TSKASSNQDE SGSPSKIEKE EGELSPIGDS GDNYVVHEER GLKSTAKSEH SIEAVGENDD DEADDEDGDD ASEGGEDASG TESVGDECSQ EDNGVEEEGE
1001: DVKAESEGEA EGMESHLIED SGSLPLSERV LLSVKPLSKR VAAADERKQD SRVFYGNDDF YVLFRLHRIL YERISSAKTY CNRRNTKDST SSPDPYARFM
1101: SALFSLLNGS AESSKFEDEC RAIIGNQSYV LFTLEKLIYK LVKHLQAIVA DDTDNKLLQL YEYEESRKPD RVIDSVYYEN ARILLHEENI YRLECSSSPP
1201: RLSIQLMDNI MEKPEAYAVS MEPTFASYLQ KEFLSNSSSG RKTALQPIVL QRNMRGYSGL DDLAVACKAM EGVKVINGLE CKMSCSSYKI SYVLDTEDYF
1301: HRKKHKKSDD LSQDKSSQKR KLNRVERFHS FLSASR
0101: RVKELFKGHN NLIFGFNTFL PKGFEITLDD LEEEEAPPKK TVEFEEAITF VNKIKKRFQR DEDVYKSFLE ILNMYRKDDK DITEVYNEVS TLFEDHPDLL
0201: EEFTKFLPES LAPHSAAQLI RSQAQRYDDR GSGPPVVRRM ITDKDRRPRE RAVASRCDRD QSVDRSDLND DKAMVKMHRD PRKRVDKENR ERRSRDLDHG
0301: EAGQDNLHHF PEKRKSSRKT EEFEAYSGHA SHSEKNNLKG MYNQAFVFCE KVKEKLCSQD DYQTFLKFLN LFSSGIIHRK ELQNFVSDLL GKFPDLMDEF
0401: NQFFERCEST DSFQHLAGVM SKKSLSSDEH LSKPMKAEEK ERDDKRDLEA AKEKERSKEK YMEKSIQELD LSECERCTPS YRLLPSDYPI PSVRHRQKSV
0501: AAVLNDHWVS VTSGSEDSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEDLLN TIIEKKISFE GSFQVEDHFT ALNLRCIERL YGDHGLDVTD
0601: LIRKNPAAAL PVILTRLKQK QDEWTKCRED FNVVWKDVYA KNHYKSLDHR SFYFKQQDSK NFSAKALVTE IKDLKEKSQI EDDVPLSISA GYRQPIVPHF
0701: EYEYFDRTIP EDLFKLVQFS CEEICSSKEQ ISKVLRLWNS FLELMLGVPP RAKGSDSVED VAETKHPVTN GEANVSSDAV SLVSRQLKFA ANGDEYASSG
0801: VSKHAGDGLL NRDSSAKENC KDVDQASKDA ATCSAVKPQK DLEIGNGANK RSGDDERVAI TSASFPSGVE NKNDNIDAIQ RTQVGDIGRT IAIANGVQPD
0901: TSKASSNQDE SGSPSKIEKE EGELSPIGDS GDNYVVHEER GLKSTAKSEH SIEAVGENDD DEADDEDGDD ASEGGEDASG TESVGDECSQ EDNGVEEEGE
1001: DVKAESEGEA EGMESHLIED SGSLPLSERV LLSVKPLSKR VAAADERKQD SRVFYGNDDF YVLFRLHRIL YERISSAKTY CNRRNTKDST SSPDPYARFM
1101: SALFSLLNGS AESSKFEDEC RAIIGNQSYV LFTLEKLIYK LVKHLQAIVA DDTDNKLLQL YEYEESRKPD RVIDSVYYEN ARILLHEENI YRLECSSSPP
1201: RLSIQLMDNI MEKPEAYAVS MEPTFASYLQ KEFLSNSSSG RKTALQPIVL QRNMRGYSGL DDLAVACKAM EGVKVINGLE CKMSCSSYKI SYVLDTEDYF
1301: HRKKHKKSDD LSQDKSSQKR KLNRVERFHS FLSASR
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.