Factsheet for Bra027831.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY45153	Canola	nucleus	99.6	76.76
Bra017891.1-P	Field mustard	nucleus	76.41	58.16
Bra035418.1-P	Field mustard	nucleus	79.49	53.57
AT1G59890.2	Thale cress	nucleus	79.89	51.07
Bra003968.1-P	Field mustard	cytosol	10.32	49.68
Bra012419.1-P	Field mustard	cytosol	4.96	43.02
Bra019933.1-P	Field mustard	nucleus	57.1	41.93
Bra024645.1-P	Field mustard	cytosol, mitochondrion, nucleus	4.96	41.11
Bra037065.1-P	Field mustard	nucleus	13.14	40.66
Bra037066.1-P	Field mustard	nucleus	15.01	40.29
Bra007893.1-P	Field mustard	cytosol	3.35	31.25
Bra003967.1-P	Field mustard	nucleus	50.54	28.67
KRH45772	Soybean	nucleus	53.49	28.6
Bra016241.1-P	Field mustard	nucleus	49.33	28.55
KRG99216	Soybean	nucleus	52.81	28.53
PGSC0003DMT400058222	Potato	nucleus	50.8	27.77
Solyc05g006540.2.1	Tomato	nucleus	50.27	27.57
Bra006276.1-P	Field mustard	nucleus	45.04	24.96
Bra023501.1-P	Field mustard	nucleus	44.24	24.7
Bra040510.1-P	Field mustard	mitochondrion, nucleus	43.7	24.24
KRH45776	Soybean	nucleus	26.54	21.48
Bra007894.1-P	Field mustard	nucleus	10.05	17.81
Bra008727.1-P	Field mustard	cytosol	8.58	16.2
Bra024644.1-P	Field mustard	mitochondrion	6.97	15.48

Protein Annotations

Gene3D:1.20.1160.11	MapMan:35.1	EnsemblPlantsGene:Bra027831	EnsemblPlants:Bra027831.1	EnsemblPlants:Bra027831.1-P	ncoils:Coil
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	InterPro:HDAC_interact_dom	InterPro:IPR003822
UniProt:M4EGB7	InterPro:PAH	InterPro:PAH_sf	PFAM:PF02671	PFAM:PF08295	PFAM:PF16879
PFscan:PS51477	PANTHER:PTHR12346	PANTHER:PTHR12346:SF21	SMART:SM00761	SUPFAM:SSF47762	InterPro:Sin3_C
UniParc:UPI0002542750	SEG:seg	:	:	:	:

Description

AT1G59890 (E=4e-073) SNL5 | SNL5 (SIN3-LIKE 5)

Coordinates

chrA09:-:9048113..9053153

Molecular Weight (calculated)

83856.9 Da

IEP (calculated)

5.298

GRAVY (calculated)

-0.608

Length

746 amino acids

Sequence
(BLAST)

001: MGGLTTGDAL SYLKAVKDMF QDKKDKYDTF LEVMKDFKAQ RVDTSGVIAR VRVLFKGYDD LLLGFNTFLP KGYKITLPEK KAVDFGEAIE FVNKIKARFG
101: SDDRAYKKFL DILNMYRKES KSISDVYQEV TLLFQDHEDL LVEFAHFLPD NSGPGSAHYP LSGSNAVPGA PVPAMHPRNF EKYLIQIPSY RNTLGEKVLN
201: DHWVSVTSGS EDYSFKHMRK NQYEESLFRC EDDRFELDML LESVNAAINR VEALLEKINN NTISIETPIC LVAEIKDISD RKHIEDPLHA IAVGTKPSFT
301: PDVEFSYTDT QVHADLYQLI KYYCEEICAT EQSDKVMKLW VTFLEPMFGV PSRSQTDETV IDVAKSKDNQ EQREAVKDNT RGGSPVSNLK PLTPPKTPNK
401: ENPTIGSSFA GAAMNTEDSQ PKLVSPKDLV IEDLENRSKV SVVSMGEPHK VEREEGELSP TESFEHDNSE VCRDNGVESV QKLPDNVRSN TSPEDDGSKP
501: TQKLLEANEN ASKVPASGSK FGGQVSLDEE HKRAMNCDQL DESFSTFSER FMDALYNLLD GSSDNTKFED ECRAIIGAQS YILFTLDKLV QKFVKHSSAQ
601: TRLSIQLMNS GNDQPEVTAV AVEPGFANYL QNEFLSLLPD EEKPGLFLKR NKAKMSGLDE SSGMSRAMEG LKIINEVECK MACSSSKVKY EPNTSDLLYR
701: SKQKKPKLSP NGLDNDKTTP SSSEISRKKR KSRFHTSLNR RLVSLR

Best Arabidopsis Sequence Match ( AT1G10450.1 )
(BLAST)

0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL

Arabidopsis Description

SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.