Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93425 | Canola | nucleus | 97.64 | 97.64 |
| CDY37976 | Canola | nucleus | 90.85 | 93.42 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 74.51 | 64.54 |
| Bra035418.1-P | Field mustard | nucleus | 64.47 | 59.17 |
| Bra017891.1-P | Field mustard | nucleus | 56.99 | 59.08 |
| Bra027831.1-P | Field mustard | nucleus | 41.93 | 57.1 |
| Bra037066.1-P | Field mustard | nucleus | 13.58 | 49.64 |
| Bra037065.1-P | Field mustard | nucleus | 11.52 | 48.55 |
| Bra003968.1-P | Field mustard | cytosol | 7.28 | 47.74 |
| Bra024645.1-P | Field mustard | cytosol, mitochondrion, nucleus | 3.74 | 42.22 |
| Bra012419.1-P | Field mustard | cytosol | 3.35 | 39.53 |
| KRG99216 | Soybean | nucleus | 53.15 | 39.1 |
| Bra008727.1-P | Field mustard | cytosol | 15.16 | 38.99 |
| KRH45772 | Soybean | nucleus | 53.05 | 38.64 |
| Bra003967.1-P | Field mustard | nucleus | 49.51 | 38.25 |
| Bra016241.1-P | Field mustard | nucleus | 48.52 | 38.25 |
| Solyc05g006540.2.1 | Tomato | nucleus | 49.21 | 36.76 |
| PGSC0003DMT400058222 | Potato | nucleus | 49.31 | 36.7 |
| Bra006276.1-P | Field mustard | nucleus | 46.16 | 34.84 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 45.47 | 34.35 |
| Bra023501.1-P | Field mustard | nucleus | 44.88 | 34.13 |
| Bra007893.1-P | Field mustard | cytosol | 2.46 | 31.25 |
| KRH45776 | Soybean | nucleus | 26.67 | 29.39 |
| Bra007894.1-P | Field mustard | nucleus | 8.86 | 21.38 |
| Bra024644.1-P | Field mustard | mitochondrion | 5.61 | 16.96 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:12.3.2.4.2 | EnsemblPlantsGene:Bra019933 | EnsemblPlants:Bra019933.1 | EnsemblPlants:Bra019933.1-P | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M4DTU0 |
| InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | PFscan:PS51477 |
| PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 | InterPro:Sin3_C | UniParc:UPI000253EA18 |
| SEG:seg | : | : | : | : | : |
Description
AT1G10450 (E=6e-280) SNL6 | SNL6 (SIN3-LIKE 6)
Coordinates
chrA06:+:3623202..3627907
Molecular Weight (calculated)
115815.0 Da
IEP (calculated)
6.641
GRAVY (calculated)
-0.697
Length
1016 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRERETKTN NRGLTTSDAL HYLKTVRNIF HDNVGKYETF LEVMRDFKAQ RVDTAGVIER IKDLFKGYND LLLGFNTFLP KDHTITLSPE EEKPKNKVDY
0101: NDAISFVTKI KARFGGDEDA YKSFLDILNM YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNAVPLRK RIKRERKLEY ESEHSDQRED
0201: GDENLVACPA GNSLGNSLVK KEGQRAYLKA EDNGGIREES ERDTDRTDKS AEAGSIDTGN QKSSPSASKY VGVPINELDL SECVQCTPSY RLLPKDYPVE
0301: IPRYRNALGK KILNDHLVSV TSGSEDYSFS HMRKNQYEES LFRCEDDRYE MDMLLGSVSS AIKHVEILLE KINNNTISTD TICIEKHLSP MNLRCIERLY
0401: GDNGLDVMDL MKKNLHSALP VILTRLKQKQ EEWARCHSDF QKVWAEVYAK NHHKSLDHRS FYFKQQDAKN LSTKCLVAEI KDISEKKHQE DLLQAISVRT
0501: MPSFTPDLEF NYCDTQIHED LYLLIKYYCE ELCTTEQADK VMNLWTTFLE PMFGIVSRSQ GNLAMDEELK SNNQELQDGC VAVKDSASGS NRKKHPRSPE
0601: KLKKDNPAVQ GSSPGKDVSS NIVKTVKHDK QQDDEALTNE LIQSSKLVSP RNDQITENVE IRKAKEVSVE VEREEGELSP TGTCEVANGP EGEDGSSAFS
0701: ERFLETIKPV ANHVPGPLKA TETGSQNDSR VFYGNDSCYV LFRFHQMLYE RMQSAKKQAE KKGKAPDNTT PDSYSRFMDA LYNLLDGSSD NTKYEDECRS
0801: AFGAQSYVLF TLDKLVQKLV KQLHAVASDE TDTKLVQLDA YENCRKKGRF FDLVYHENAR AILHDANIYR IRYSSVETTL SIQLMNSHPE VTGTAMDPGF
0901: ADYLQNDFLT SVNDEEKHGV FLKRNKEKLT GIDESSGMLV AMEGLNVING IEAKMACSTS KVKYIANTSD LLYRSKQRKR NPMGQRLKRI SEISKQRRIS
1001: RFHIMLNCKT MALPSL
0101: NDAISFVTKI KARFGGDEDA YKSFLDILNM YRKDKKSITE VYKEVTLLFK GHEDLLVEFV NFLPSCSEST STKNAVPLRK RIKRERKLEY ESEHSDQRED
0201: GDENLVACPA GNSLGNSLVK KEGQRAYLKA EDNGGIREES ERDTDRTDKS AEAGSIDTGN QKSSPSASKY VGVPINELDL SECVQCTPSY RLLPKDYPVE
0301: IPRYRNALGK KILNDHLVSV TSGSEDYSFS HMRKNQYEES LFRCEDDRYE MDMLLGSVSS AIKHVEILLE KINNNTISTD TICIEKHLSP MNLRCIERLY
0401: GDNGLDVMDL MKKNLHSALP VILTRLKQKQ EEWARCHSDF QKVWAEVYAK NHHKSLDHRS FYFKQQDAKN LSTKCLVAEI KDISEKKHQE DLLQAISVRT
0501: MPSFTPDLEF NYCDTQIHED LYLLIKYYCE ELCTTEQADK VMNLWTTFLE PMFGIVSRSQ GNLAMDEELK SNNQELQDGC VAVKDSASGS NRKKHPRSPE
0601: KLKKDNPAVQ GSSPGKDVSS NIVKTVKHDK QQDDEALTNE LIQSSKLVSP RNDQITENVE IRKAKEVSVE VEREEGELSP TGTCEVANGP EGEDGSSAFS
0701: ERFLETIKPV ANHVPGPLKA TETGSQNDSR VFYGNDSCYV LFRFHQMLYE RMQSAKKQAE KKGKAPDNTT PDSYSRFMDA LYNLLDGSSD NTKYEDECRS
0801: AFGAQSYVLF TLDKLVQKLV KQLHAVASDE TDTKLVQLDA YENCRKKGRF FDLVYHENAR AILHDANIYR IRYSSVETTL SIQLMNSHPE VTGTAMDPGF
0901: ADYLQNDFLT SVNDEEKHGV FLKRNKEKLT GIDESSGMLV AMEGLNVING IEAKMACSTS KVKYIANTSD LLYRSKQRKR NPMGQRLKRI SEISKQRRIS
1001: RFHIMLNCKT MALPSL
0001: MKRAREDVHT DTQKRKPEVS SRGETNKLPR TIDALTYLKA VKDIFHDNKE KYESFLELMK EFKAQTIDTN GVIERIKVLF KGYRDLLLGF NTFLPKGYKI
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
0101: TLLPEEEKPK IRVDFKDAIG FVTKIKTRFG DDEHAYKRFL DILNLYRKEK KSISEVYEEV TMLFKGHEDL LMEFVNFLPN CPESAPSTKN AVPRHKGTAT
0201: TAMHSDKKRK QRCKLEDYSG HSDQREDGDE NLVTCSADSP VGEGQPGYFR DYENREDTET DTADRTEKSA ASGSQDIGNH KSTTKYVGTP INELDLSECT
0301: QCTPSYRLLP KDYAVEIPSY RNTLGKKTLN DHLVSVTSGS EDYSFSHMRK NQYEESLFRC EDDRYEMDML LGSVSSAIKQ VEILLEKMNN NTISVDSTIC
0401: IEKHLSAMNL RCIERLYGDN GLDVMDLLKK NMHSALPVIL TRLKQKQEEW ARCHSDFQKV WAEVYAKNHH KSLDHRSFYF KQQDSKNLST KCLVAEVKDI
0501: SEKKHQEDLL QAIAVRVMPL FTPDLEFNYC DTQIHEDLYL LIKYYCEEIC ATEQSDKVMK LWITFLEPIF GILSRSQDNL ALEDVSKLKN NRELQDACLA
0601: VKETASGSNR KHPISPKRLS KDNTKMQGSS SREDVSANIK VKTAQPDKLQ DDAAMTNEVI QSSKFVSPKN DQIMEDEGNH MVNAASVEKH ELEEGELSPT
0701: ASREQSNFEV NGQNAFKPLQ KVTDNVRSNK DKQSCDKKGA KNKTRAEDDK QENCHKLSEN NKTASEMLVS GTKVSCHEEN NRVMNCNGRG SVAGEMANGN
0801: QGEDGSFAFS ERFLQTVKPV AKHLSWPLQA SETCSQNDSQ VFYGNDSYYV LFRLHQMLYE RIQTAKKHSE KKWKAADNTT PDSYPRFMDA LYNLLDGSID
0901: NTKFEDECRA IFGAQSYVLF TLDKLVQKFV KHLHSVASDE TDTKLLQLHA YENYRKPGKF FDLVYHENAC ALLHEANIYR IRYSSEGTRL SIQLMNSGNN
1001: QLEVMGVAME PAFADYLQNK CLKSVNDEEN HGLFLNRNKK KFTSLDESRG MPVAMERLNI INEMECRMAC SSSKVKYVAN TSDLLYRSKQ GKPNSRVSEI
1101: LKQRRISRFH IMLNCRLCAL PL
Arabidopsis Description
SNL6Paired amphipathic helix protein Sin3-like 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9XIK6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.