Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31594 | Canola | nucleus | 22.67 | 52.64 |
| KRG99215 | Soybean | cytosol | 7.59 | 51.09 |
| KRH18559 | Soybean | nucleus | 24.08 | 47.23 |
| KRH45778 | Soybean | cytosol | 31.56 | 45.68 |
| KRH45772 | Soybean | nucleus | 64.75 | 42.8 |
| KRG99216 | Soybean | nucleus | 63.12 | 42.14 |
| CDY06480 | Canola | cytosol | 10.74 | 41.95 |
| KRH74716 | Soybean | nucleus | 58.03 | 40.68 |
| CDY08302 | Canola | cytosol | 10.95 | 39.45 |
| CDY08301 | Canola | cytosol | 11.82 | 39.21 |
| Bra037066.1-P | Field mustard | nucleus | 11.71 | 38.85 |
| Bra037065.1-P | Field mustard | nucleus | 9.87 | 37.76 |
| KRH69432 | Soybean | nucleus | 58.13 | 37.48 |
| KRH18551 | Soybean | cytosol, nucleus, peroxisome | 7.7 | 32.87 |
| Solyc05g006540.2.1 | Tomato | nucleus | 45.01 | 30.51 |
| PGSC0003DMT400058222 | Potato | nucleus | 45.12 | 30.48 |
| KRG93437 | Soybean | nucleus | 43.49 | 28.6 |
| CDY30912 | Canola | nucleus | 31.24 | 27.43 |
| CDY37976 | Canola | nucleus | 29.18 | 27.23 |
| AT1G59890.2 | Thale cress | nucleus | 34.38 | 27.16 |
| CDX93425 | Canola | nucleus | 29.39 | 26.67 |
| Bra019933.1-P | Field mustard | nucleus | 29.39 | 26.67 |
| Bra035418.1-P | Field mustard | nucleus | 31.89 | 26.56 |
| Bra027831.1-P | Field mustard | nucleus | 21.48 | 26.54 |
| CDY24499 | Canola | nucleus | 31.89 | 26.51 |
| Bra017891.1-P | Field mustard | nucleus | 27.66 | 26.02 |
| CDY45153 | Canola | nucleus | 26.9 | 25.62 |
| CDY33612 | Canola | nucleus | 31.78 | 25.41 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 30.69 | 24.13 |
| KRH18561 | Soybean | nucleus | 19.52 | 19.96 |
| CDY31595 | Canola | nucleus | 7.27 | 9.68 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:106799801 | MapMan:12.3.2.4.2 | EMBL:ACUP02005285 | EnsemblPlantsGene:GLYMA_08G293000 | GO:GO:0000118 |
| GO:GO:0000122 | GO:GO:0000785 | GO:GO:0001106 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004407 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 |
| GO:GO:0006355 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0016575 | GO:GO:0016787 | GO:GO:0019538 | InterPro:HDAC_interact_dom | InterPro:IPR003822 |
| UniProt:K7L9N6 | EnsemblPlants:KRH45776 | ProteinID:KRH45776 | ProteinID:KRH45776.1 | InterPro:PAH | InterPro:PAH_sf |
| PFAM:PF02671 | PFAM:PF08295 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 |
| SUPFAM:SSF47762 | UniParc:UPI000294CB46 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr8:-:40766365..40774088
Molecular Weight (calculated)
105011.0 Da
IEP (calculated)
5.916
GRAVY (calculated)
-0.835
Length
922 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRSRDDSYT SSQPKRPKGS SREEEPSGQS QMTTGDGQIP TTKDALAFLK AVEDAFQDKR EKYDYFMVIM KDFKAQRIDT IGVMERVEEL FKGHKDLILG
101: FNTFLPKGYK IILPLEDEQP PQKKLIELKE EAINFVGKIK ARFHDNDRVY KSFQNICMCR KETKSITEIY QEVSALFQGH ADLLEEFNHF LPDIPGTTST
201: QYASVQNSLL HDRSSAMPTI RQMHVEKRER NIASHGDHDL SADHPDPELD SCLMMADKDQ RRRGAKENDC RKGRDRREQE RDDGDYDHDG SREHLSHKRK
301: SGCRAEDSGA ESMHPISYAC EDISSLKSMC SPVFGYLEKV KEKLQNPEVF QEFLKYLYIY SMEIITRQEL QSLVGNILGK YADLIEGFDE FLDQCEKNEI
401: FWHEGHGPKP MKVEDRDQDR DDKMEKRDRK CLERVKSNAT ANKDVSVPKM SLYASKDKYA MKPINELDLS NCEQCTPSYR LLPKQYPILP ASDRTELDAE
501: VLNDNWVSVT SGSEDYSFKH RYKNQYEDSM FRCEDDRYEL DMLLESVNAT TKQVEDFLEK INANIIKGYC PIRIEEHLTA LNLRCIEQIY GDHGLDVVDA
601: LKKNALLALP VILTRLKQKQ DEWARSRADF NKVWSETYAK YHHKSLDQCN GTAIAKGHGG HHVGFTIMNP KNFNNNTNGN ESVLLEESNS CKQRQTIGDN
701: KVEEDNSLDS DCSAHKTETE TFGSSTQHGQ MHLIATNLDE ISRAKKQDHS IDRLVNANVS MSSGMEQSNR RTNVGNASGL TATPPSRPGN VSNEGGLDLP
801: SLEETLSQSV SQEEVADHDH NDILGRTLNV PKHLGRDRGL GFEVTQKINV SLQQMPLSIT NGHVQQIQKG LVDLKKGTNK LEMEVQMQMN KEPQEEGLGG
901: LSGINSCTPT ATHIPEQNFR HL
101: FNTFLPKGYK IILPLEDEQP PQKKLIELKE EAINFVGKIK ARFHDNDRVY KSFQNICMCR KETKSITEIY QEVSALFQGH ADLLEEFNHF LPDIPGTTST
201: QYASVQNSLL HDRSSAMPTI RQMHVEKRER NIASHGDHDL SADHPDPELD SCLMMADKDQ RRRGAKENDC RKGRDRREQE RDDGDYDHDG SREHLSHKRK
301: SGCRAEDSGA ESMHPISYAC EDISSLKSMC SPVFGYLEKV KEKLQNPEVF QEFLKYLYIY SMEIITRQEL QSLVGNILGK YADLIEGFDE FLDQCEKNEI
401: FWHEGHGPKP MKVEDRDQDR DDKMEKRDRK CLERVKSNAT ANKDVSVPKM SLYASKDKYA MKPINELDLS NCEQCTPSYR LLPKQYPILP ASDRTELDAE
501: VLNDNWVSVT SGSEDYSFKH RYKNQYEDSM FRCEDDRYEL DMLLESVNAT TKQVEDFLEK INANIIKGYC PIRIEEHLTA LNLRCIEQIY GDHGLDVVDA
601: LKKNALLALP VILTRLKQKQ DEWARSRADF NKVWSETYAK YHHKSLDQCN GTAIAKGHGG HHVGFTIMNP KNFNNNTNGN ESVLLEESNS CKQRQTIGDN
701: KVEEDNSLDS DCSAHKTETE TFGSSTQHGQ MHLIATNLDE ISRAKKQDHS IDRLVNANVS MSSGMEQSNR RTNVGNASGL TATPPSRPGN VSNEGGLDLP
801: SLEETLSQSV SQEEVADHDH NDILGRTLNV PKHLGRDRGL GFEVTQKINV SLQQMPLSIT NGHVQQIQKG LVDLKKGTNK LEMEVQMQMN KEPQEEGLGG
901: LSGINSCTPT ATHIPEQNFR HL
0001: MVGGGSAQKL TTNDALAYLK AVKDKFQDQR GKYDEFLEVM KNFKSQRVDT AGVITRVKEL FKGHQELILG FNTFLPKGFE ITLQPEDGQP PLKKRVEFEE
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
0101: AISFVNKIKT RFQGDDRVYK SFLDILNMYR RDSKSITEVY QEVAILFRDH SDLLVEFTHF LPDTSATASI PSVKTSVRER GVSLADKKDR IITPHPDHDY
0201: GTEHIDQDRE RPIKKENKEH MRGTNKENEH RDARDFEPHS KKEQFLNKKQ KLHIRGDDPA EISNQSKLSG AVPSSSTYDE KGAMKSYSQD LAIVDRVKEK
0301: LNASEYQEFL RCLNLFSKEI ISRPELQSLV GNLIGVYPDL MDSFIEFLVQ CEKNEGLLSG ILTKSKSTYL LQGEGKYPQP SLDNDRDQEH KRDDGLRDRD
0401: HEKERLEKAA ANLKWAKPIS ELDLSNCEQC TPSYRLLPKN YPISIASQKT EIGKLVLNDH WVSVTSGSED YSFSHMRKNQ YEESLFKCED DRFELDMLLE
0501: SVNSTTKHVE ELLTKINSNE LKTNSPIRVE DHLTALNLRC IERLYGDHGL DVMDVLKKNV SLALPVILTR LKQKQEEWAR CRSDFDKVWA EIYAKNYYKS
0601: LDHRSFYFKQ QDSKKLSMKA LLAEIKEITE KKREDDSLLA FAAGNRLSIS PDLEFDYPDH DLHEDLYQLI KYSCAEMCST EQLDKVMKIW TTFVEQIFGV
0701: PSRPQGAEDQ EDVVKSMNQN VKSGSSSAGE SEGSPHNYAS VADSRRSKSS RKANEHSQLG QTSNSERDGA AGRTSDALCE TAQHEKMLKN VVTSDEKPES
0801: KQAVSIERAH DSTALAVDGL LDQSNGGSSI VHMTGHCNNN LKPVTCGTEL ELKMNDGNGP KLEVGNKKLL TNGIAVEITS DQEMAGTSKV EREEGELSPN
0901: GDFEEDNFAV YAKTDFETFS KANDSTGNNI SGDRSREGEP SCLETRAEND AEGDENAARS SEDSRNEYEN GDVSGTESGG GEDPEDDLDN NNKGESEGEA
1001: ECMADAHDAE ENGSALPVSA RFLLHVKPLV KYVPSAIALH DKDKDSLKNS QVFYGNDSFY VLFRLHRILY ERILSAKVNS SSPEGKWRTS NTKNPTDSYA
1101: RFMTALYNLL DGTSDNAKFE DDCRAIIGTQ SYILFTLDKL IHKFIKHLQV VVADEMDNKL LQLYFYEKSR RPETIFDAVY YDNTRVLLPD ENIYRIECRL
1201: STPAKLSIQL MCNGLDKPDV TSVSIDPTFA AYLHNDFLSI QPNAREDRRI YLNRNKRKVC REDEQLYSTD EVKIKNGLEC KIACGSSKVS YVLETEDLLV
1301: RVKKRRKTLC HNQDSWVRQM RLQYYKNNFL
Arabidopsis Description
SNL3SIN3-like 3 [Source:TAIR;Acc:AT1G24190]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.