Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g006540.2.1 | Tomato | nucleus | 98.1 | 98.46 |
| KRH45772 | Soybean | nucleus | 59.12 | 57.85 |
| KRG99216 | Soybean | nucleus | 58.46 | 57.78 |
| CDY31594 | Canola | nucleus | 15.6 | 53.65 |
| CDY30912 | Canola | nucleus | 39.63 | 51.52 |
| Bra027831.1-P | Field mustard | nucleus | 27.77 | 50.8 |
| Bra017891.1-P | Field mustard | nucleus | 35.9 | 50.0 |
| CDY37976 | Canola | nucleus | 36.12 | 49.9 |
| PGSC0003DMT400003538 | Potato | nucleus | 49.45 | 49.74 |
| Bra035418.1-P | Field mustard | nucleus | 40.07 | 49.41 |
| CDX93425 | Canola | nucleus | 36.7 | 49.31 |
| Bra019933.1-P | Field mustard | nucleus | 36.7 | 49.31 |
| CDY24499 | Canola | nucleus | 40.0 | 49.23 |
| AT1G59890.2 | Thale cress | nucleus | 41.9 | 49.01 |
| CDY06480 | Canola | cytosol | 8.35 | 48.31 |
| CDY45153 | Canola | nucleus | 33.7 | 47.52 |
| CDY33612 | Canola | nucleus | 39.93 | 47.27 |
| CDY08302 | Canola | cytosol | 8.86 | 47.27 |
| CDY31595 | Canola | nucleus | 23.44 | 46.24 |
| Bra037066.1-P | Field mustard | nucleus | 9.3 | 45.68 |
| Bra037065.1-P | Field mustard | nucleus | 8.06 | 45.64 |
| CDY08301 | Canola | cytosol | 9.23 | 45.32 |
| KRH45776 | Soybean | nucleus | 30.48 | 45.12 |
| AT1G10450.3 | Thale cress | endoplasmic reticulum, plastid | 38.17 | 44.42 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 15.24 | 40.62 |
| PGSC0003DMT400084963 | Potato | cytosol | 7.03 | 34.91 |
| PGSC0003DMT400003540 | Potato | nucleus | 9.89 | 33.75 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 6.3 | 31.16 |
| PGSC0003DMT400097436 | Potato | cytosol | 11.14 | 30.65 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:102584539 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M1C2A4 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | EnsemblPlantsGene:PGSC0003DMG400022606 | PGSC:PGSC0003DMG400022606 |
| EnsemblPlants:PGSC0003DMT400058222 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 |
| InterPro:Sin3_C | UniParc:UPI00029612C6 | RefSeq:XP_006357220.1 | SEG:seg | : | : |
Description
WRKY domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400022606]
Coordinates
chr5:+:6620036..6628678
Molecular Weight (calculated)
154814.0 Da
IEP (calculated)
5.653
GRAVY (calculated)
-0.745
Length
1365 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSQLKRPIV VSSRGEPSGQ SPMMGGSSAN KLTTNDALSY LKSVKEIFQD RRDKYDEFLD VMKDFKSQRI DTSGVIARVK DLFKGHRTLI LGFNTFLPKG
0101: YEITNPEDEA PVKKPVEFEE AISFVNKIKT RFQGDDFVYK SFLDILNMYR KENKAIAEVY NEVSYLFRGH ADLLEEFTHF LPDAMAAARA RNAQAHRAPI
0201: MRYDEKSSSM TAARHMHVEK KATSLVVREN AVDRSDPEYE ETTMRTERER RERQYEDREL DRKSVHRDVA VDQFEPSMQD HGFAYCERVK ERLQDMGDRK
0301: QFFKCLNFYC KEGVTRTQLQ SGVSSLLQKH PDLMDGFDEF ISHCERTDGY LAAILSKTQS LWSDEPNPKS EKVEDRDKDR DCEWEERNRV HETRERDRPE
0401: RPIAYATRDA QGQKMSLYTS KDKYAAKPIH ELDLSNCDSC SPSYRLLPKN YPIPLASQKT DIGAEVLNDH WVSVTSGSED YSFKHMRKNQ YEESLFRCED
0501: DRFELDMLLE SVNATTRRVE ELLNKINDNT ISSDSHIRIE EHFTALNLRC IERLYGDHGL DVMDVLRKNA PLALPVILTR LKQKQEEWAR CRSDFNKVWA
0601: EIYAKNYHKS LDHRSFYFKQ QDTKSLSTKA LLAEIKEISE NKCKEDDVLL SVAAGNGQPI ITHLEFEYPD SDIHEDLYQI IKYSCIEVCT REQLDKVMKI
0701: WTTFLEPIFG VPRQPQGEVD GVDVEKAKNL NAKDKTAIEG KRVGSPASGS GMNCRQSSSR NGDELPTSEH VISSRVQIAD GENGFKDDSS PNVNGVMLKI
0801: VTSKNLLHHG KSDANLNMAD GASGLSRESF CADQLVLSNS TTVGESHGRV CIETASGHGA GTSRPSGSTI KREPEIVSSN DSKDGGFVDP KAEGIKVEKC
0901: LEESVGKCKL EREEGELTPN GDFEDNSTPS SEGGQNVSHS LKGSSSSKLY QSGHGEEKIC GGDRGRENDA DEEGEASAHG TSDDSENASE NCDVSGSESA
1001: NGEGSHEERE EDGDNDVNDN KVESEGEVEG TADAHDAEGD GAVMPFSERL LHTSRPLTKH VPSIFHVREK ESRIFYGNDS FYVLFRLHQT LYERLQKAKS
1101: HSSSAEHRWR VSNAINPTES YSRFRSALYN LLDGSSDNAK FEDDCRAIIG AQSYLLFTLD KLIYKIVKQL QTIATDELEG KLLQLYTYEI SRNSSTFSDV
1201: VYHENVRALL HDETIYRIAC SSKTTRLSIQ LMDYVYDKPE MSAVTMDPNF AAYMSNELLS VIPQKENPGV FLTRNKRKSG VRDETFTSEA MEGLKFFNGL
1301: ECKIACSSSK VSYVLDTEDF LIRSRKRRRI LKENLLSNGH SECLNRSNKI QRFRRLLSVE HAHFA
0101: YEITNPEDEA PVKKPVEFEE AISFVNKIKT RFQGDDFVYK SFLDILNMYR KENKAIAEVY NEVSYLFRGH ADLLEEFTHF LPDAMAAARA RNAQAHRAPI
0201: MRYDEKSSSM TAARHMHVEK KATSLVVREN AVDRSDPEYE ETTMRTERER RERQYEDREL DRKSVHRDVA VDQFEPSMQD HGFAYCERVK ERLQDMGDRK
0301: QFFKCLNFYC KEGVTRTQLQ SGVSSLLQKH PDLMDGFDEF ISHCERTDGY LAAILSKTQS LWSDEPNPKS EKVEDRDKDR DCEWEERNRV HETRERDRPE
0401: RPIAYATRDA QGQKMSLYTS KDKYAAKPIH ELDLSNCDSC SPSYRLLPKN YPIPLASQKT DIGAEVLNDH WVSVTSGSED YSFKHMRKNQ YEESLFRCED
0501: DRFELDMLLE SVNATTRRVE ELLNKINDNT ISSDSHIRIE EHFTALNLRC IERLYGDHGL DVMDVLRKNA PLALPVILTR LKQKQEEWAR CRSDFNKVWA
0601: EIYAKNYHKS LDHRSFYFKQ QDTKSLSTKA LLAEIKEISE NKCKEDDVLL SVAAGNGQPI ITHLEFEYPD SDIHEDLYQI IKYSCIEVCT REQLDKVMKI
0701: WTTFLEPIFG VPRQPQGEVD GVDVEKAKNL NAKDKTAIEG KRVGSPASGS GMNCRQSSSR NGDELPTSEH VISSRVQIAD GENGFKDDSS PNVNGVMLKI
0801: VTSKNLLHHG KSDANLNMAD GASGLSRESF CADQLVLSNS TTVGESHGRV CIETASGHGA GTSRPSGSTI KREPEIVSSN DSKDGGFVDP KAEGIKVEKC
0901: LEESVGKCKL EREEGELTPN GDFEDNSTPS SEGGQNVSHS LKGSSSSKLY QSGHGEEKIC GGDRGRENDA DEEGEASAHG TSDDSENASE NCDVSGSESA
1001: NGEGSHEERE EDGDNDVNDN KVESEGEVEG TADAHDAEGD GAVMPFSERL LHTSRPLTKH VPSIFHVREK ESRIFYGNDS FYVLFRLHQT LYERLQKAKS
1101: HSSSAEHRWR VSNAINPTES YSRFRSALYN LLDGSSDNAK FEDDCRAIIG AQSYLLFTLD KLIYKIVKQL QTIATDELEG KLLQLYTYEI SRNSSTFSDV
1201: VYHENVRALL HDETIYRIAC SSKTTRLSIQ LMDYVYDKPE MSAVTMDPNF AAYMSNELLS VIPQKENPGV FLTRNKRKSG VRDETFTSEA MEGLKFFNGL
1301: ECKIACSSSK VSYVLDTEDF LIRSRKRRRI LKENLLSNGH SECLNRSNKI QRFRRLLSVE HAHFA
0001: MVGGSSAQKL TTNDALAYLK AVKDKFQDKR DKYDEFLEVM KDFKAQRVDT TGVILRVKEL FKGNRELILG FNTFLPKGFE ITLRPEDDQP AAPKKPVEFE
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
0101: EAISFVNKIK TRFQGDDRVY KSFLDILNMY RKENKSITEV YHEVAILFRD HHDLLGEFTH FLPDTSATAS TNDSVKVPVR DRGIKSLPTM RQIDLDKKDR
0201: IITSHPNRAL KTENMDVDHE RSLLKDSKEE VRRIDKKNDF MDDRDRKDYR GLDHDSHKEH FFNSKKKLIR KDDDSAEMSD QAREGDKFSG AIPSSSTYDE
0301: KGHSQELAFV DRVKAKLDTA DNQEFLRCLN LYSKEIISQP ELQSLVSDLI GVYPDLMDAF KVFLAQCDKN DGLLSGIVSK KSLWSEGKCP QPTKSLDKDT
0401: DREREKIERY RERDREKERL EKVAASQKWA KPISELDLSN CEQCTPSYRR LPKNYPIPIA SQKMEIGSQV LNDHWVSVTS GSEDYSFKHM RKNQYEESLF
0501: KCEDDRFELD MLLESVISAT NRVEELLAKI NSNELKTDTP ICIEDHLTAL NLRCIERLYS DHGLDVLDLL KKNAYLALPV ILTRLKQKQE EWARCRTEFN
0601: KVWADIYTKN YHRSLDHRSF YFKQQDSKNL STKALLAEIK EISEKKRGED DALLALAAGN RRTISSNMSF DYPDPDLHED LYQLIKYSCG EMCSTEQLDK
0701: VMKVWTEFLE PIFGVPSRPQ GAEDREDAVK STNHDREDQE DAVSPQNGAS IANSMRSNGP RKVNESNQVR QASELDKDVT SSKTSDALLS CDNTQNDKMP
0801: KNLTTPDERA ETKQAVSIER AHNSNALPLD GLLPQRNGKI SSLSVAGLSN SNPKPALTSG TEELKPNYVN GPRVEIGDNP VIPNGTVAEW FAGEAKVERE
0901: EGELSPTGDF EEDNYAVHGE NDMEALSKSK ENDATADDAS APRSSDGSGN TSHNGDVSGT DSGDGEDCYR EDDIDHNKVE SEGEAEEGMS DGHDDTEGDM
1001: PVLSISVKNL LHVKPLAKYV PPALYDKDND DSRKNSQVFY GNDSFYVLFR LHQILYDRIL SAKINSSSPD RKWKTSNPTN PADSYARIMD ALYNLLDGTS
1101: DNSKFEDDCR AIIGTQSYVL FTLDKLIYKL IKHLQAVAAD EMDNKLQQLY AYEKSRKPEK FLDAVYYENA LVLLPDEDIY RIECEQSTPS KLSIQLLDYG
1201: HDKPDVTSIS MDPTFAAYLH NVFLSYQPNA KENPRIYLKR NKRKNGGDDE LCTTDEVKII NGLECKITCS SSKVSYVLDT EDVLHRAKRR KLLNQSGLPL
1301: AHDSVCSGSL IRQRRTQRYQ KLLTGQ
Arabidopsis Description
SNL4Paired amphipathic helix protein Sin3-like 4 [Source:UniProtKB/Swiss-Prot;Acc:O04539]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.