Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc10g047990.1.1 | Tomato | cytosol | 21.57 | 71.81 |
| Solyc10g047970.1.1 | Tomato | cytosol | 32.46 | 71.24 |
| Solyc10g047980.1.1 | Tomato | nucleus | 31.45 | 71.23 |
| Solyc10g048000.1.1 | Tomato | endoplasmic reticulum | 41.53 | 69.59 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 31.45 | 56.52 |
| PGSC0003DMT400003540 | Potato | nucleus | 19.96 | 24.75 |
| CDY55066 | Canola | cytosol | 18.75 | 23.37 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 22.58 | 21.88 |
| PGSC0003DMT400084963 | Potato | cytosol | 10.48 | 18.91 |
| PGSC0003DMT400003538 | Potato | nucleus | 32.86 | 12.01 |
| PGSC0003DMT400058222 | Potato | nucleus | 30.65 | 11.14 |
| CDY55065 | Canola | nucleus | 10.08 | 7.15 |
Protein Annotations
| Gene3D:1.20.1160.11 | MapMan:35.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| InterPro:IPR003822 | UniProt:M1E0M4 | InterPro:PAH | InterPro:PAH_sf | PFAM:PF02671 | EnsemblPlantsGene:PGSC0003DMG400047007 |
| PGSC:PGSC0003DMG400047007 | EnsemblPlants:PGSC0003DMT400097436 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF8 | SUPFAM:SSF47762 |
| UniParc:UPI000294DA9A | SEG:seg | : | : | : | : |
Description
Paired amphipathic helix protein Sin3-like 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400047007]
Coordinates
chr10:+:31240413..31246808
Molecular Weight (calculated)
56125.1 Da
IEP (calculated)
7.471
GRAVY (calculated)
-0.177
Length
496 amino acids
Sequence
(BLAST)
(BLAST)
001: MQGTQRLPKG PLYEQQHWKW EALLEAQESP SGVLPSRSCQ PESSQIGPQA MDVANLLGLL IFLFPESLKS MKRLRSDVID TPPFKRPICS SHGESNIDPG
101: AALSYVREIK GTFVDQVEKY DMFLDVMKDL KARRIDPVGV IERVRELFKG HPSLLLGFNA FVPNGYKIML NDEDKASSKK TTNYEEERNL VENIKKCFGN
201: DQEFKLFVDI MMMYKKESKD INEVYHEVAV LFNAHPDLLD EFTEFLKDSV TPNPLCSLLL VLNPLLPCGY DLILNNEVKP PLKKSIHFEQ KHLVNNHEYK
301: SFLDIMNKCR KERNDVKEVY NEVAVLLNDR PDLLDEFSGF LPDSVTTNML SNLDDDKKSM KSAGEGARLS YNVAGSLANS VASKVVSIIY KILLNRHNLS
401: FCIPEKFKNS AKTILSKSIF LKNNCDVPDR VGSVFSCLRV YISVLIIVDL FLSYKGIRSV SSFRINLESL LKLVMARGLS LSQLELVGLV GNRVVA
101: AALSYVREIK GTFVDQVEKY DMFLDVMKDL KARRIDPVGV IERVRELFKG HPSLLLGFNA FVPNGYKIML NDEDKASSKK TTNYEEERNL VENIKKCFGN
201: DQEFKLFVDI MMMYKKESKD INEVYHEVAV LFNAHPDLLD EFTEFLKDSV TPNPLCSLLL VLNPLLPCGY DLILNNEVKP PLKKSIHFEQ KHLVNNHEYK
301: SFLDIMNKCR KERNDVKEVY NEVAVLLNDR PDLLDEFSGF LPDSVTTNML SNLDDDKKSM KSAGEGARLS YNVAGSLANS VASKVVSIIY KILLNRHNLS
401: FCIPEKFKNS AKTILSKSIF LKNNCDVPDR VGSVFSCLRV YISVLIIVDL FLSYKGIRSV SSFRINLESL LKLVMARGLS LSQLELVGLV GNRVVA
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRVS AIDSYDLLSH
1101: ILYERILSAK TYCSGSEMKL RNTKDTCSPD PYARFMNALF SLLNGSAENS KFEDECRAII GNQSYVLFTL EKLIYKLVKQ LQAVVADDMD NKLLQLYEYE
1201: NSRRPGRVFD SVYYENARIL LHEENIYRLE CSSSPSRLSI QLMDNIIEKP DAYAVSMEPT FTSYLQNEFL SNSSGKKELQ DIVLQRNMRG YNGLDDLAVA
1301: CKAMEGVQVI NGLECKMSCS SYKISYVLDT EDFFHRKKKQ KKSNNLSLAK LSQNRIARFH KFLSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.