Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g087360.2.1 | Tomato | nucleus | 92.26 | 93.22 |
| Solyc02g087370.1.1 | Tomato | cytosol | 11.5 | 81.25 |
| Solyc02g087380.1.1 | Tomato | nucleus, plastid | 8.11 | 80.29 |
| KRH18559 | Soybean | nucleus | 23.51 | 67.87 |
| VIT_14s0066g02330.t01 | Wine grape | nucleus | 61.61 | 60.36 |
| KRG93437 | Soybean | nucleus | 60.5 | 58.56 |
| KRH18561 | Soybean | nucleus | 36.7 | 55.21 |
| CDX91007 | Canola | nucleus | 52.47 | 53.82 |
| Bra006276.1-P | Field mustard | nucleus | 53.28 | 53.71 |
| CDX70587 | Canola | nucleus | 53.57 | 53.65 |
| CDX78604 | Canola | nucleus | 53.35 | 53.63 |
| CDX85568 | Canola | nucleus | 52.47 | 53.29 |
| Bra023501.1-P | Field mustard | nucleus | 52.47 | 53.29 |
| AT5G15020.1 | Thale cress | nucleus | 53.65 | 53.26 |
| AT3G01320.1 | Thale cress | mitochondrion, nucleus | 52.62 | 52.04 |
| Bra040510.1-P | Field mustard | mitochondrion, nucleus | 51.22 | 51.67 |
| CDY28683 | Canola | mitochondrion, nucleus | 50.85 | 51.26 |
| PGSC0003DMT400058222 | Potato | nucleus | 49.74 | 49.45 |
| PGSC0003DMT400003545 | Potato | cytosol, mitochondrion | 18.28 | 48.44 |
| PGSC0003DMT400084963 | Potato | cytosol | 7.89 | 38.91 |
| PGSC0003DMT400090159 | Potato | cytosol, extracellular, mitochondrion, nucleus | 7.74 | 38.04 |
| PGSC0003DMT400003540 | Potato | nucleus | 11.2 | 38.0 |
| PGSC0003DMT400097436 | Potato | cytosol | 12.01 | 32.86 |
Protein Annotations
| Gene3D:1.20.1160.11 | EntrezGene:102602535 | MapMan:12.3.2.4.2 | ncoils:Coil | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | InterPro:HDAC_interact_dom | InterPro:IPR003822 | UniProt:M0ZLV7 | InterPro:PAH |
| InterPro:PAH_sf | PFAM:PF02671 | PFAM:PF08295 | PFAM:PF16879 | EnsemblPlantsGene:PGSC0003DMG400001397 | PGSC:PGSC0003DMG400001397 |
| EnsemblPlants:PGSC0003DMT400003538 | PFscan:PS51477 | PANTHER:PTHR12346 | PANTHER:PTHR12346:SF21 | SMART:SM00761 | SUPFAM:SSF47762 |
| InterPro:Sin3_C | UniParc:UPI000296B21A | SEG:seg | : | : | : |
Description
SIN3 component, histone deacetylase complex [Source:PGSC_GENE;Acc:PGSC0003DMG400001397]
Coordinates
chr2:+:46651167..46659023
Molecular Weight (calculated)
153087.0 Da
IEP (calculated)
5.022
GRAVY (calculated)
-0.782
Length
1357 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKRLRDDGYD SPSFKRPFGS NRGESYSPSQ VPGSGPGGGG GGSSAGGAGA TASNPKLTTG DALSYLKEVK DMFQSQRDKY DMFLDVMKDF KAQRIDTVGV
0101: IERVKDLFKG HPRLILGFNT FLPKGYEITL NDEDEAPPKK VEFEEAISFV NKIKVTFLLP SSLNNKGLPF SFIKNSSPNL LGYHFLQTRF QNDDHVYKSF
0201: LDILNMYRKE HKGIDEVYRE VAVLFSDHPD LLDEFTRFLP DNSGTASAAQ TSVGRPSFHR YDERSSAMPI LRQSHMDKRF RRDRIIGPYA ERDLSIERPD
0301: LDDEKTMIKL HKEQKRRAEK ESRDRRTHDQ DYKEPDNENN EDLSMQRHTD KKKSARKVEE FGGPHEDKDA LKNMYSQEFS FCEKVKERLR SPTDYQAFLK
0401: CLHIYSTEII TRTELQSLVA DLLGKHPDLL EGFGEFLERC EQDDGFLEGV MRKSRWNDGH ASKSVKDDGK DKEPKRETDG TKEKDRYKEK YWGKSIQELD
0501: LSNCKRCTPS YRLLPDDYPI PTASQKSELG AQVLNDHWVS VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVS STAKRVEELL NAINDNSIGG
0601: AFRVEDHFTV LNLRCIERIY GDHGLDTVDI LRKNPSHALP VILTRLKQKQ EEWTKCRTDF NKVWSEIYAK NHYKSLDHRS FYFKQQDSKN LGSKSLLVEI
0701: KEIKENKQKE DDMILSISAG SRHPITPNLE FDYTDSELHE DLYKLIKYSC EEVCSSKEQL DKVLGLWTNF VEQILGVPCR PHDSEATEND VLLKPHGPKV
0801: GGTSIDESDG SPSADAITRN CKQSKVISNR DANASPLRIT PSRTSFANAD ALPKEDGLPV IGEHLTSSDA APAMGADTVH GRVEITSGRG ARQGNGAADD
0901: GQVSKSNIDN VPASESDTSR SIPLGNGGFA EGSTINGYND DSADPCKNEK EEGELSPNGD FEEDNFVAFR SGASHNGSVQ YQTRGAEEIG SQDAAGENDA
1001: DADDEDSENV SEAEEDVSGS ESAADECSRE EHEEEDGGEH DELDGKAESE GEAEGTNEAH YAGGDGNVLQ MSDRVLLTSK PLTKYVASPV YEGVVKYPRV
1101: FYGNETFYVL FRLQQILYER LLSAKLNSAS SESKWRTGKD TGSIPYDRFM SALHSLLDGS AENSKFEDDC RSIIGNQSYV LFTLDKLIYK LVKQLQTVSS
1201: DELDCKLLQL YEYERLRKPE KFVDSAYYEN AHFLLQEDSI YRFECTSSPT RLSIQLMDDR GDKSEVVAVA VDPNFAGYLH NDYLSVKHGK KESSAVLLKR
1301: NKRKRADNDE STALCMAMEH VILVNGLECK MASNSSKVNE FYSCSHHYVI LISCPLH
0101: IERVKDLFKG HPRLILGFNT FLPKGYEITL NDEDEAPPKK VEFEEAISFV NKIKVTFLLP SSLNNKGLPF SFIKNSSPNL LGYHFLQTRF QNDDHVYKSF
0201: LDILNMYRKE HKGIDEVYRE VAVLFSDHPD LLDEFTRFLP DNSGTASAAQ TSVGRPSFHR YDERSSAMPI LRQSHMDKRF RRDRIIGPYA ERDLSIERPD
0301: LDDEKTMIKL HKEQKRRAEK ESRDRRTHDQ DYKEPDNENN EDLSMQRHTD KKKSARKVEE FGGPHEDKDA LKNMYSQEFS FCEKVKERLR SPTDYQAFLK
0401: CLHIYSTEII TRTELQSLVA DLLGKHPDLL EGFGEFLERC EQDDGFLEGV MRKSRWNDGH ASKSVKDDGK DKEPKRETDG TKEKDRYKEK YWGKSIQELD
0501: LSNCKRCTPS YRLLPDDYPI PTASQKSELG AQVLNDHWVS VTSGSEDYSF KHMRRNQYEE SLFRCEDDRF ELDMLLESVS STAKRVEELL NAINDNSIGG
0601: AFRVEDHFTV LNLRCIERIY GDHGLDTVDI LRKNPSHALP VILTRLKQKQ EEWTKCRTDF NKVWSEIYAK NHYKSLDHRS FYFKQQDSKN LGSKSLLVEI
0701: KEIKENKQKE DDMILSISAG SRHPITPNLE FDYTDSELHE DLYKLIKYSC EEVCSSKEQL DKVLGLWTNF VEQILGVPCR PHDSEATEND VLLKPHGPKV
0801: GGTSIDESDG SPSADAITRN CKQSKVISNR DANASPLRIT PSRTSFANAD ALPKEDGLPV IGEHLTSSDA APAMGADTVH GRVEITSGRG ARQGNGAADD
0901: GQVSKSNIDN VPASESDTSR SIPLGNGGFA EGSTINGYND DSADPCKNEK EEGELSPNGD FEEDNFVAFR SGASHNGSVQ YQTRGAEEIG SQDAAGENDA
1001: DADDEDSENV SEAEEDVSGS ESAADECSRE EHEEEDGGEH DELDGKAESE GEAEGTNEAH YAGGDGNVLQ MSDRVLLTSK PLTKYVASPV YEGVVKYPRV
1101: FYGNETFYVL FRLQQILYER LLSAKLNSAS SESKWRTGKD TGSIPYDRFM SALHSLLDGS AENSKFEDDC RSIIGNQSYV LFTLDKLIYK LVKQLQTVSS
1201: DELDCKLLQL YEYERLRKPE KFVDSAYYEN AHFLLQEDSI YRFECTSSPT RLSIQLMDDR GDKSEVVAVA VDPNFAGYLH NDYLSVKHGK KESSAVLLKR
1301: NKRKRADNDE STALCMAMEH VILVNGLECK MASNSSKVNE FYSCSHHYVI LISCPLH
0001: MKRIRDDIYA TGSQFKRPLG SSRGESYEQS PITGGGSIGE GGINTQKLTT DDALTYLKEV KEMFQDQRDK YDMFLEVMKD FKAQKTDTSG VISRVKELFK
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
0101: GHNNLIFGFN TFLPKGFEIT LDDVEAPSKK TVEFEEAISF VNKIKTRFQH NELVYKSFLE ILNMYRKDNK DITEVYNEVS TLFEDHSDLL EEFTRFLPDS
0201: LAPHTEAQLL RSQAQRYDDR GSGPPLVRRM FMEKDRRRER TVASRGDRDH SVDRSDLNDD KSMVKMHRDQ RKRVDKDNRE RRSRDLEDGE AEQDNLQHFS
0301: EKRKSSRRME GFEAYSGPAS HSEKNNLKSM YNQAFLFCEK VKERLCSQDD YQAFLKCLNM FSNGIIQRKD LQNLVSDVLG KFPDLMDEFN QFFERCESID
0401: GFQHLAGVMS KKSLGSEENL SRSVKGEEKD REHKRDVEAA KEKERSKDKY MGKSIQELDL SDCERCTPSY RLLPPDYPIP SVRHRQKSGA AVLNDHWVSV
0501: TSGSEDYSFK HMRRNQYEES LFRCEDDRFE LDMLLESVGS AAKSAEELLN IIIDKKISFE GSFRIEDHFT ALNLRCIERL YGDHGLDVTD LIRKNPAAAL
0601: PVILTRLKQK QDEWTKCREG FNVVWADVYA KNHYKSLDHR SFYFKQQDSK NLSAKALVSE VKDLKEKSQK EDDVVLSISA GYRQPIIPHL EYDYLDRAIH
0701: EDLFKLVQFS CEEICSTKEQ TGKVLKLWAN FLELMLDVAP RAKGSDSVED VVETQHQRAF TSGEANESSD AISLVSRQLK FATNGDVHAS SGVSKHGETG
0801: LLNRDSSGKE NLKDGDLANK DVATCAEKPQ KDQEIGNGAA KRSGDVDERV ATSSSSFPSG VENNNGKVGS RDSSGSRGIL SKPSEAIDKV DSIQHTQGVD
0901: IGRIIVLGNG LQSDTSKANS NYDESGGPSK IEKEEGELSP VGDSEDNFVV YEDRELKATA KTEHSVEAEG ENDEDADDED GDDASEAGED ASGTESIGDE
1001: CSQDDNGVEE EGEHDEIDGK AESEGEAEGM ESHLIEDKGL FPSSERVLLS VKPLSKHIAA AALVDEKKKD SRVFYGNDDF YVLFRLHRIL YERILSAKTY
1101: CSGSEMKLRN TKDTCSPDPY ARFMNALFSL LNGSAENSKF EDECRAIIGN QSYVLFTLEK LIYKLVKQLQ AVVADDMDNK LLQLYEYENS RRPGRVFDSV
1201: YYENARILLH EENIYRLECS SSPSRLSIQL MDNIIEKPDA YAVSMEPTFT SYLQNEFLSN SSGKKELQDI VLQRNMRGYN GLDDLAVACK AMEGVQVING
1301: LECKMSCSSY KISYVLDTED FFHRKKKQKK SNNLSLAKLS QNRIARFHKF LSASR
Arabidopsis Description
SNL2Paired amphipathic helix protein Sin3-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LFQ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.