Factsheet for PGSC0003DMT400060234

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003538
PGSC0003DMT400003545

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	PGSC0003DMT400003538	AT3G01320.1	19962994
AT5G13820.1	PGSC0003DMT400003545	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g054410.2.1	Tomato	nucleus	89.99	89.99
PGSC0003DMT400016260	Potato	nucleus	55.01	56.57
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	49.64	48.58
KRG97906	Soybean	nucleus	46.15	47.18
KRH30983	Soybean	nucleus	46.15	46.83
CDX91094	Canola	nucleus	37.01	45.78
CDX85624	Canola	mitochondrion	36.14	45.69
AT5G13820.1	Thale cress	nucleus	42.24	45.47
AT3G12560.2	Thale cress	nucleus	40.2	44.75
CDY08423	Canola	nucleus	39.77	44.26
Bra006218.1-P	Field mustard	mitochondrion	39.19	44.12
CDX78540	Canola	nucleus	39.04	44.03
Bra023437.1-P	Field mustard	nucleus	36.43	43.88
Bra034751.1-P	Field mustard	nucleus	38.46	43.66
CDX70522	Canola	nucleus	36.57	43.6
CDY42156	Canola	nucleus	38.75	43.56
CDY50529	Canola	nucleus	38.32	43.49
CDY50353	Canola	nucleus	38.32	43.42
Bra038729.1-P	Field mustard	nucleus	38.03	42.95
GSMUA_Achr8P20810_001	Banana	nucleus	39.91	42.24
CDX69626	Canola	nucleus	35.56	41.32
Bra008800.1-P	Field mustard	nucleus	35.41	41.15
CDY68172	Canola	nucleus	33.67	41.13
GSMUA_Achr7P15090_001	Banana	nucleus	40.35	40.12
PGSC0003DMT400005476	Potato	nucleus	40.2	40.03
PGSC0003DMT400077969	Potato	nucleus	40.2	39.86
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	36.43	38.91
KXG39691	Sorghum	nucleus, plastid	38.46	37.54
Os03t0274300-01	Rice	nucleus	37.45	37.28
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.17	36.94
GSMUA_Achr10P...	Banana	cytosol, plastid	4.79	35.87
TraesCS3A01G528500.1	Wheat	nucleus, plastid	33.82	35.79
TraesCS4D01G208600.1	Wheat	nucleus	35.85	35.75
HORVU4Hr1G059800.2	Barley	nucleus	35.85	35.75
TraesCS4B01G207700.1	Wheat	nucleus	35.85	35.69
TraesCS4A01G096700.1	Wheat	nucleus	35.7	35.6
TraesCS3D01G533700.1	Wheat	nucleus, plastid	33.38	35.38
TraesCS3B01G597500.1	Wheat	nucleus, plastid	33.38	35.33
HORVU3Hr1G115540.2	Barley	nucleus, plastid	33.38	34.95
Zm00001d028608_P006	Maize	nucleus	33.96	33.62
Zm00001d047808_P001	Maize	nucleus, plastid	35.85	33.07
EES10985	Sorghum	mitochondrion	30.91	32.77
TraesCS6A01G392300.1	Wheat	nucleus	27.43	28.17
TraesCS6D01G378100.1	Wheat	nucleus	27.43	28.17
TraesCS6B01G432500.1	Wheat	nucleus	27.29	28.02
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	24.82	22.01
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.56	20.18
Os02t0817800-03	Rice	nucleus	12.05	13.11

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:102584827	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	UniProt:M1C5G1
InterPro:Myb_dom	EnsemblPlantsGene:PGSC0003DMG400023432	PGSC:PGSC0003DMG400023432	EnsemblPlants:PGSC0003DMT400060234	PFscan:PS50053	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236
UniParc:UPI000295F6A6	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006345970.1	SEG:seg	:

Description

Telomere binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400023432]

Coordinates

chr5:-:50142804..50146995

Molecular Weight (calculated)

76923.6 Da

IEP (calculated)

8.845

GRAVY (calculated)

-0.702

Length

689 amino acids

Sequence
(BLAST)

001: MVYKKKLDFG FNGFQVPVIP KAPRSVRRRR SCKKLDDDQI CAFELLAAVA GKLLLESESS TSSNAAEGKN EIADGRDGIK SEQVEEGKAV KSEYLDQGSC
101: VESDYIPETA AQDQNLKHGF DKPHHAENNY FLEHTSIVIG SDADLKLENC KEVNIPDGKF HPKIEGGSSS LEDPCDGKIR TGIQKHLDDD SKQIEDVTVT
201: NTCSVKNPIE ECVNNSGLFN SDGSVQLPLY RDSVPSASFV KHRNSVKLGI RDDDENSFDC YRYSTKLRAF RTTSRLGYRR IRKMLKSRHW KAAPKLKEYE
301: RSYTNGGVES FYLSRKSVRA RKRCQLEVPS KRRKLSNHGF AVAYYQEASS ESVTNSPDKE IKRDINTSHA IPPRGTTDPA PVNNHHKKDP NVKFSIKSFK
401: VPELYIEVPE TATVGSLKRT VMEAVTAILE SGLRVGVVLQ GKKVRDDNRT LEQAGISQNG NLDNLGFTLE PRFTQVSPSS SPNKLLASST YAADQELTRR
501: RPSPILELGI HNASADPLET EMCKYNENNH PSELSPTNPI DSSTDVSIPD SRALVIVPSV NAEALAMVPL NQKSKRSELS QRRIRRPFSV AEVEALVEAV
601: EHLGTGRWRD VKMRAFDNAD HRTYVDLKDK WKTLVHTASI APQQRRGEPV PQELLDRVLA AHAYWSQQQG KHHAEPLKTP DAKALKVGA

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.