Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08423 | Canola | nucleus | 74.47 | 74.47 |
| Bra034751.1-P | Field mustard | nucleus | 72.37 | 73.81 |
| CDY50529 | Canola | nucleus | 72.05 | 73.48 |
| CDY42156 | Canola | nucleus | 72.21 | 72.92 |
| Bra038729.1-P | Field mustard | nucleus | 71.73 | 72.79 |
| CDY50353 | Canola | nucleus | 70.92 | 72.2 |
| AT5G13820.1 | Thale cress | nucleus | 54.6 | 52.81 |
| KRG97906 | Soybean | nucleus | 47.33 | 43.47 |
| KRH30983 | Soybean | nucleus | 46.85 | 42.71 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 47.01 | 41.34 |
| AT3G46590.2 | Thale cress | nucleus | 36.19 | 40.51 |
| PGSC0003DMT400060234 | Potato | nucleus | 44.75 | 40.2 |
| Solyc05g054410.2.1 | Tomato | nucleus | 44.43 | 39.91 |
| AT3G53790.1 | Thale cress | nucleus | 25.69 | 39.75 |
| AT5G59430.2 | Thale cress | nucleus | 35.06 | 37.54 |
| PGSC0003DMT400016260 | Potato | nucleus | 40.39 | 37.31 |
| AT1G07540.1 | Thale cress | nucleus | 37.48 | 36.83 |
| Solyc04g011650.2.1 | Tomato | nucleus | 39.42 | 36.58 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EntrezGene:820436 | UniProt:A0A178VNC8 | ProteinID:AAG51038.1 | ProteinID:AEE75213.1 |
| EMBL:AK227790 | ProteinID:ANM65523.1 | ArrayExpress:AT3G12560 | EnsemblPlantsGene:AT3G12560 | RefSeq:AT3G12560 | TAIR:AT3G12560 |
| RefSeq:AT3G12560-TAIR-G | EnsemblPlants:AT3G12560.2 | EMBL:AY181997 | EMBL:AY550302 | Unigene:At.39576 | ProteinID:BAB02267.1 |
| EMBL:BT006452 | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003691 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008301 |
| GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009737 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031627 |
| GO:GO:0042162 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_001327482.1 | RefSeq:NP_187862.1 |
| ProteinID:OAP06322.1 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | UniProt:Q9C7B1 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | Symbol:TRFL9 | UniParc:UPI00000A371E | InterPro:Ubiquitin-like_domsf |
| SEG:seg | : | : | : | : | : |
Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
Coordinates
chr3:-:3981880..3985625
Molecular Weight (calculated)
68762.2 Da
IEP (calculated)
8.503
GRAVY (calculated)
-0.635
Length
619 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.