Factsheet for Solyc04g011650.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 3
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g067570.2.1
Solyc02g087360.2.1
Solyc02g087370.1.1
Solyc02g087380.1.1
Solyc02g087390.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	Solyc02g067570.2.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087360.2.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087370.1.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087380.1.1	AT3G01320.1	19962994
AT5G13820.1	Solyc02g087390.1.1	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400016260	Potato	nucleus	93.25	92.84
Solyc05g054410.2.1	Tomato	nucleus	57.12	55.3
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	45.58	43.18
CDX91094	Canola	nucleus	34.63	41.47
KRH30983	Soybean	nucleus	42.13	41.38
KRG97906	Soybean	nucleus	41.68	41.25
CDX85624	Canola	mitochondrion	33.28	40.73
Bra023437.1-P	Field mustard	nucleus	34.48	40.21
AT5G13820.1	Thale cress	nucleus	38.38	40.0
CDY50529	Canola	nucleus	36.13	39.7
Bra006218.1-P	Field mustard	mitochondrion	36.28	39.54
AT3G12560.2	Thale cress	nucleus	36.58	39.42
CDX70522	Canola	nucleus	34.03	39.27
Bra038729.1-P	Field mustard	nucleus	35.83	39.18
CDX78540	Canola	nucleus	35.68	38.95
CDY42156	Canola	nucleus	35.68	38.83
GSMUA_Achr8P20810_001	Banana	nucleus	37.78	38.71
CDY50353	Canola	nucleus	35.23	38.65
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.18	38.45
Bra034751.1-P	Field mustard	nucleus	34.63	38.06
CDY08423	Canola	nucleus	35.23	37.96
Solyc06g005590.2.1	Tomato	nucleus	39.13	37.88
CDY68172	Canola	nucleus	31.33	37.06
CDX69626	Canola	nucleus	32.38	36.42
Bra008800.1-P	Field mustard	nucleus	32.23	36.26
GSMUA_Achr7P15090_001	Banana	nucleus	37.63	36.22
Os03t0274300-01	Rice	nucleus	36.73	35.4
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	37.33	34.97
Solyc06g076270.2.1	Tomato	nucleus	36.58	34.86
HORVU4Hr1G059800.2	Barley	nucleus	34.78	33.57
TraesCS4B01G207700.1	Wheat	nucleus	34.78	33.53
TraesCS4D01G208600.1	Wheat	nucleus	34.63	33.43
TraesCS4A01G096700.1	Wheat	nucleus	34.63	33.43
KXG39691	Sorghum	nucleus, plastid	35.23	33.29
GSMUA_Achr10P...	Banana	cytosol, plastid	4.35	31.52
TraesCS3A01G528500.1	Wheat	nucleus, plastid	30.28	31.03
TraesCS3B01G597500.1	Wheat	nucleus, plastid	29.84	30.57
Zm00001d047808_P001	Maize	nucleus, plastid	34.18	30.52
TraesCS3D01G533700.1	Wheat	nucleus, plastid	29.69	30.46
Solyc12g027690.1.1	Tomato	extracellular	7.05	30.32
HORVU3Hr1G115540.2	Barley	nucleus, plastid	29.54	29.94
Zm00001d028608_P006	Maize	nucleus	30.88	29.6
EES10985	Sorghum	mitochondrion	28.64	29.38
TraesCS6A01G392300.1	Wheat	nucleus	26.54	26.38
TraesCS6B01G432500.1	Wheat	nucleus	26.39	26.23
TraesCS6D01G378100.1	Wheat	nucleus	26.39	26.23
Solyc12g027710.1.1	Tomato	cytosol	8.55	23.55
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.39	20.08
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	25.34	18.63
Os02t0817800-03	Rice	nucleus	10.64	11.22

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930
UniProt:K4BPL8	InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	EnsemblPlantsGene:Solyc04g011650.2	EnsemblPlants:Solyc04g011650.2.1
UniParc:UPI0002765FF4	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

No Description!

Coordinates

chr4:-:4115805..4119204

Molecular Weight (calculated)

74957.5 Da

IEP (calculated)

9.836

GRAVY (calculated)

-0.758

Length

667 amino acids

Sequence
(BLAST)

001: MSSKKRVRHG FSGFEFPVIP KAPRSVRRRH SHKNINNDQI CAFELLATVA GELLQESESS ACSSAVIGKD KLSDCREVVK REQLKEDKAV KSECFDQGSC
101: VESAYLPEPA VQEPNLKYSL DKPNRIENNI FRTEVEGASS NLEDVYDKRT DTGTQKQLTD DGKQTEDLTL ANSSSVKGPI EKRVNNNSAI NSDSSVQLPW
201: YRAVPRPSFG KQRNNVKLGI RDDDENSFGS YRHNTNIRAF RQTSRNGYKS MRKMLTSRRW KVAPQLKDWE RSCSKYGMKS FHRNRKRVCA LERCRFEIPS
301: KRRKLCHYSL AVAYDQQANS KSISNSPEKG IKRDITGVGA SASVRNHRKK DSNVKFSIKS FKVPELFIEV PENETVGSLK RTVMDAVKSI LGSGLRVGMV
401: VQGKKVRDDN KTLQQAGISQ NGNLDTLGFT LEPSSYPVSP SLHSKDLPAL SPYVADHELT RRPPSPIMEL ELPSFSSALS ETRLDEHDKD YHELALSPTN
501: PIDPPSDVAI SDSRALVVPN AEAHPVVPVN PKNRCSEHSQ RRTRRPFSVA EVEALVEAVE QLGTGRWRDV KIRAFEYADH RTYVDVKDKW KTLVHTASIA
601: PQQRRGEPVP QELLDRVLVA HDYWSKQHGK NQAEPAKMTE AQLLHVGTLE NSNNSNSMPS KMVGSAI

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.