Factsheet for TraesCS3B01G597500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 2
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G528500.1	Wheat	nucleus, plastid	95.85	95.85
TraesCS3D01G533700.1	Wheat	nucleus, plastid	95.55	95.69
HORVU3Hr1G115540.2	Barley	nucleus, plastid	93.09	92.1
EES10985	Sorghum	mitochondrion	58.68	58.77
TraesCS6B01G432500.1	Wheat	nucleus	44.24	42.92
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	39.78	40.16
GSMUA_Achr8P20810_001	Banana	nucleus	39.02	39.02
VIT_06s0004g04940.t01	Wine grape	nucleus	38.4	35.92
AT3G46590.2	Thale cress	nucleus	30.41	35.8
TraesCS4B01G207700.1	Wheat	nucleus	37.63	35.4
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.71	35.39
GSMUA_Achr7P15090_001	Banana	nucleus	37.63	35.35
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	47.47	34.07
CDY06712	Canola	nucleus	31.18	34.06
Bra015585.1-P	Field mustard	nucleus	31.18	33.95
CDY10282	Canola	nucleus	31.18	33.83
PGSC0003DMT400060234	Potato	nucleus	35.33	33.38
Solyc05g054410.2.1	Tomato	nucleus	35.18	33.24
PGSC0003DMT400005476	Potato	nucleus	35.18	33.09
Solyc06g005590.2.1	Tomato	nucleus	35.02	33.09
CDY15617	Canola	nucleus	29.8	32.88
AT5G59430.2	Thale cress	nucleus	29.19	32.87
AT1G07540.1	Thale cress	nucleus	31.64	32.7
Bra002566.1-P	Field mustard	nucleus	28.42	32.51
PGSC0003DMT400077969	Potato	nucleus	34.56	32.37
Bra030689.1-P	Field mustard	nucleus	30.11	32.29
VIT_08s0007g00500.t01	Wine grape	nucleus	33.95	32.17
KRG99966	Soybean	nucleus	29.65	32.01
Solyc06g076270.2.1	Tomato	nucleus	34.1	31.71
KRH24782	Soybean	nucleus	30.57	31.69
KRH49110	Soybean	nucleus	29.34	31.52
KRH29783	Soybean	nucleus	33.33	31.45
KRG97906	Soybean	nucleus	31.64	30.56
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	33.03	30.54
KRH23087	Soybean	nucleus	33.64	30.5
GSMUA_Achr10P...	Banana	cytosol, plastid	4.3	30.43
KRH10245	Soybean	nucleus	33.64	30.42
KRH30983	Soybean	nucleus	31.34	30.04
CDX86474	Canola	nucleus	25.65	29.98
Solyc04g011650.2.1	Tomato	nucleus	30.57	29.84
PGSC0003DMT400016260	Potato	nucleus	30.41	29.55
Solyc12g027690.1.1	Tomato	extracellular	5.38	22.58
CDY33039	Canola	nucleus	28.57	22.49
CDX80268	Canola	nucleus	28.26	22.22
Solyc12g027710.1.1	Tomato	cytosol	7.07	19.01

Protein Annotations

EnsemblPlants:TraesCS3B01G597500.1	EnsemblPlantsGene:TraesCS3B01G597500	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	TIGR:cd11660	MapMan:15.5.2.2	:	:	:

Description

No Description!

Coordinates

chr3B:-:819788128..819792885

Molecular Weight (calculated)

70702.0 Da

IEP (calculated)

9.252

GRAVY (calculated)

-0.507

Length

651 amino acids

Sequence
(BLAST)

001: MVVRKRLDYG SRGHQVPAMP RVPSSARGKR SARRKKDEMS PFDLLATVAG TLLVDHENSS NAPGINAAAA LTYARKRKSV KAEKCDDVPP LKSMAVENCI
101: AGSGGVCASP RQPNICLAEN SSTRNGTDPV LESLTVKPNM LVRDSVFSCT KSCNRAHGVG GIPECGSSRS LEATNQVQVQ RPLDGDTTAL YSLVSSVDLD
201: GRPPALVSSD SSSGVPLCIH DKDRNTSHLC HAEARHAADR DDDENSSGCT HPCTAGNNKS YMPQYAGNSR IRKMFASKIR KAARNKMCGE MSNKGSKLNL
301: CGKKISTTRQ RVQRAMFKRQ KPVRRHFTPS SAKGILTEAS GASFSVEGQN PLCGSEDYNV KLRIKSFTIP ELFIEIPENA TVGSLKRTVM DVVTSIIESG
401: LRVGVLLQGK SIQDDNKTLR QARICHGENL ENIDFTLECE AGQNSSPGVR IPEEMDFHGA DAMKPLAMVK CEEPFSEAKA GYNSQQRVQA SPHRVQSEHG
501: SVHSLFETTA HEASASSQAI VPVASPSSEA LAIVPVCKSK RPAIGQRRIR RPFSLPEVEA LVEAVEQLGT GRWRDVKMLA FDNTDHRTYV DLKDKWKTLV
601: HTASISPQQR RGEPVPQGLL DRVLAAQAYW SQQQQQVISG KASGQGCSSS C

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.