CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 4
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH23087	Soybean	nucleus	89.86	90.11
KRH29783	Soybean	nucleus	56.94	59.42
KRH24782	Soybean	nucleus	51.81	59.39
VIT_06s0004g04940.t01	Wine grape	nucleus	51.81	53.59
PGSC0003DMT400077969	Potato	nucleus	43.61	45.18
Solyc06g076270.2.1	Tomato	nucleus	43.61	44.86
PGSC0003DMT400005476	Potato	nucleus	42.92	44.65
Solyc06g005590.2.1	Tomato	nucleus	42.08	43.98
GSMUA_Achr8P20810_001	Banana	nucleus	38.47	42.55
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.5	41.86
KRG99966	Soybean	nucleus	34.72	41.46
GSMUA_Achr7P15090_001	Banana	nucleus	38.19	39.68
Os03t0274300-01	Rice	nucleus	38.06	39.6
KRG97906	Soybean	nucleus	36.94	39.47
KRH30983	Soybean	nucleus	37.08	39.32
KXG39691	Sorghum	nucleus, plastid	38.47	39.24
KRH49110	Soybean	nucleus	32.92	39.11
TraesCS4A01G096700.1	Wheat	nucleus	36.67	38.21
HORVU4Hr1G059800.2	Barley	nucleus	36.67	38.21
TraesCS4D01G208600.1	Wheat	nucleus	36.67	38.21
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	37.64	38.06
TraesCS4B01G207700.1	Wheat	nucleus	36.39	37.86
GSMUA_Achr10P...	Banana	cytosol, plastid	4.72	36.96
Zm00001d047808_P001	Maize	nucleus, plastid	36.25	34.94
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.25	34.19
TraesCS3A01G528500.1	Wheat	nucleus, plastid	30.83	34.1
TraesCS3D01G533700.1	Wheat	nucleus, plastid	30.69	34.0
Zm00001d028608_P006	Maize	nucleus	32.64	33.76
EES10985	Sorghum	mitochondrion	30.42	33.69
TraesCS3B01G597500.1	Wheat	nucleus, plastid	30.42	33.64
TraesCS6B01G432500.1	Wheat	nucleus	24.03	25.78
TraesCS6D01G378100.1	Wheat	nucleus	23.89	25.63
TraesCS6A01G392300.1	Wheat	nucleus	23.75	25.48
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	21.39	19.82
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	24.72	19.63
Os02t0817800-03	Rice	nucleus	11.67	13.27

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100780881	MapMan:15.5.2.2	EMBL:ACUP02009127	EnsemblPlantsGene:GLYMA_15G037300	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf
InterPro:IPR000626	InterPro:IPR017930	UniProt:K7M9E2	EnsemblPlants:KRH10245	ProteinID:KRH10245	ProteinID:KRH10245.1
InterPro:Myb_dom	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb
SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI0002964465	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:2940192..2946115

Molecular Weight (calculated)

79715.0 Da

IEP (calculated)

8.359

GRAVY (calculated)

-0.652

Length

720 amino acids

Sequence
(BLAST)

001: MVLQKRLDYS FYGYHVPTKR RATRSAKRRA TFQRRLEDNQ MCAFDLLATI ADNLLQEKQN PTISSDRSSE KDRDGFSKVE CQDANKPFKT ELSDEASCDR
101: KCQHEFVREG CPDANKPFKA ELSDEGSSDR KCFSNISSQL YNQNCCLKEL LQHEIDGHSC IASIVTSSSC SEKIVAERLV DGKGHNGVEN LASKVELGSS
201: GCLESSGCKL DGDVSKVKDG KVGKVPIDTG TGMCCFEDPL DEKPPALISS CGNAKMSGYD DSKPQSSLSK GCDNVLVDSR DDDENFSGYA HPSTKINSFK
301: QITCIDDRKI KKTLDSKYHK VSQESKHDIL SNSVLDGNLK SVYSSRKNYY KSQRSQMCIP FKKRKLFNCS SSDTNSNGYI RSDDTCYSPK NDTNQSVSCS
401: SSGMSKDHGT SSLGHSALRS RDSHVKLRIK SFRVPELFIE IPETATVGSL KRTVMEAVTA VLGGGLRVGV ILHGKKVRDD SKTLLQTGIS HDNHLDALGF
501: ALEPNCSQNR SSACATTDSL CVPGADMHQP LIGYPSSRAA IHQRIQGFSN MLAEHQATGL GNLVESDHDS APSPINTSGE KNLTDSKELI TVPEMGMEAL
601: AVLPVHQKSK RTEIAPRRIR RPFSVAEVEA LVQAVEKLGT GRWRDVKLHA FDNAKHRTYV DLKDKWKTLV HTARISPQQR RGEPVPQELL DRVLTAHAYW
701: SQQQTKQQLK HHSTKPCLLL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.