Factsheet for PGSC0003DMT400005476

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005590.2.1	Tomato	nucleus	81.5	81.86
PGSC0003DMT400077969	Potato	nucleus	57.51	57.27
VIT_06s0004g04940.t01	Wine grape	nucleus	52.6	52.3
GSMUA_Achr8P20810_001	Banana	nucleus	42.2	44.85
KRH23087	Soybean	nucleus	44.65	43.04
KRH10245	Soybean	nucleus	44.65	42.92
GSMUA_Achr7P15090_001	Banana	nucleus	42.2	42.14
KRH29783	Soybean	nucleus	41.76	41.88
KRH24782	Soybean	nucleus	37.72	41.56
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.49	41.29
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.29	41.09
PGSC0003DMT400060234	Potato	nucleus	40.03	40.2
KXG39691	Sorghum	nucleus, plastid	40.03	39.24
Os03t0274300-01	Rice	nucleus	39.02	39.02
HORVU4Hr1G059800.2	Barley	nucleus	38.87	38.93
TraesCS4D01G208600.1	Wheat	nucleus	38.73	38.78
TraesCS4A01G096700.1	Wheat	nucleus	38.73	38.78
TraesCS4B01G207700.1	Wheat	nucleus	38.73	38.73
PGSC0003DMT400016260	Potato	nucleus	37.43	38.66
GSMUA_Achr10P...	Banana	cytosol, plastid	4.77	35.87
TraesCS3D01G533700.1	Wheat	nucleus, plastid	33.38	35.54
TraesCS3A01G528500.1	Wheat	nucleus, plastid	33.38	35.48
HORVU3Hr1G115540.2	Barley	nucleus, plastid	33.67	35.41
Zm00001d047808_P001	Maize	nucleus, plastid	38.01	35.21
TraesCS3B01G597500.1	Wheat	nucleus, plastid	33.09	35.18
EES10985	Sorghum	mitochondrion	32.8	34.92
Zm00001d028608_P006	Maize	nucleus	34.54	34.34
TraesCS6A01G392300.1	Wheat	nucleus	26.45	27.27
TraesCS6B01G432500.1	Wheat	nucleus	26.45	27.27
TraesCS6D01G378100.1	Wheat	nucleus	26.45	27.27
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.7	21.11
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	27.46	20.95
Os02t0817800-03	Rice	nucleus	12.28	13.43

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:102584447	MapMan:15.5.2.2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	GO:GO:0005515	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	UniProt:M0ZPY1
InterPro:Myb_dom	EnsemblPlantsGene:PGSC0003DMG400002138	PGSC:PGSC0003DMG400002138	EnsemblPlants:PGSC0003DMT400005476	PFscan:PS50053	PFscan:PS51294
PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236
UniParc:UPI000295934B	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	RefSeq:XP_006358691.1	SEG:seg	:

Description

MYBR domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400002138]

Coordinates

chr6:-:4700839..4704888

Molecular Weight (calculated)

76519.9 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.651

Length

692 amino acids

Sequence
(BLAST)

001: MELHKRLDYG FIGYQVPHIP RATRSARGRG NIRKKSDSNE MCAFDLLTTV AGKLLLEGES TSKSSGKDQS AVLKDTTETV KEDEDTPLKE NRCNEQCQER
101: GFFISQIVSE APVVNHCLSK STDTLSGPAS VITSSDCSEK LGSAELFING ERKTENRNCS TKVEHELSGC GDFSSCTLGT ESKKQVKINL SNDAAITTNK
201: RAAVCSSEFP DPWDRKRSML VASDNTVKLS LSTDPDPFGS FPVIRNDVQL ANKDDDEKSC GCTQPSTRNM AFRPAPHVGD WRMRKLQASK YWEVNPQSDD
301: EGHVNVDNET RHVYQKRENV YTSERSQRDF PFKKRKLYYC NSFSNSDGGS SDGICSSPTK DLNRDASGYS LASSGACAAA GTSIPKAASA SFRSNDSHVK
401: LKIKSFRVPE LFVEIPENAT VGSLKRTVME AVTAILGGGL RIGVVFQGKK VRDDSKTLFQ AGISHDDKLD ALGFTLEPSP SRASPPLGPE GRSPVLPCET
501: PQPLTRCSPG STIIHNGMQQ ETYNAFPDYS GTNLSNFIES DHDSAPSPPD ASLEKNAADS RALVPVAAMD AEALAVVPMR KPKRCETVQR RIRRPFSVFE
601: VEALVQAVEK LGTGRWRDVK MRAFDNAKHR TYVDLKDKWK TLVHTARISP QQRRGEPVPQ ELLDRVLIAH AYWSQQQARQ QMKHQSETRL LL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.