CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 4
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24782	Soybean	nucleus	80.58	88.53
KRH23087	Soybean	nucleus	59.28	56.96
KRH10245	Soybean	nucleus	59.42	56.94
VIT_06s0004g04940.t01	Wine grape	nucleus	53.19	52.73
PGSC0003DMT400077969	Potato	nucleus	43.77	43.45
Solyc06g076270.2.1	Tomato	nucleus	43.04	42.43
Solyc06g005590.2.1	Tomato	nucleus	42.17	42.24
GSMUA_Achr8P20810_001	Banana	nucleus	39.57	41.94
PGSC0003DMT400005476	Potato	nucleus	41.88	41.76
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.99	41.71
KRG99966	Soybean	nucleus	35.51	40.63
GSMUA_Achr7P15090_001	Banana	nucleus	40.29	40.12
KRG97906	Soybean	nucleus	38.84	39.76
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	40.72	39.47
KRH30983	Soybean	nucleus	38.7	39.32
KRH49110	Soybean	nucleus	33.91	38.61
Os03t0274300-01	Rice	nucleus	37.54	37.43
KXG39691	Sorghum	nucleus, plastid	38.12	37.25
TraesCS4A01G096700.1	Wheat	nucleus	36.52	36.47
HORVU4Hr1G059800.2	Barley	nucleus	36.52	36.47
TraesCS4D01G208600.1	Wheat	nucleus	36.23	36.18
TraesCS4B01G207700.1	Wheat	nucleus	36.23	36.13
GSMUA_Achr10P...	Banana	cytosol, plastid	4.64	34.78
EES10985	Sorghum	mitochondrion	31.74	33.69
TraesCS3A01G528500.1	Wheat	nucleus, plastid	31.59	33.49
TraesCS3B01G597500.1	Wheat	nucleus, plastid	31.45	33.33
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.74	33.28
TraesCS3D01G533700.1	Wheat	nucleus, plastid	31.3	33.23
Zm00001d047808_P001	Maize	nucleus, plastid	35.8	33.07
Zm00001d028608_P006	Maize	nucleus	32.61	32.33
TraesCS6D01G378100.1	Wheat	nucleus	25.22	25.93
TraesCS6A01G392300.1	Wheat	nucleus	24.93	25.63
TraesCS6B01G432500.1	Wheat	nucleus	24.78	25.48
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.67	20.29
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	22.17	19.69
Os02t0817800-03	Rice	nucleus	11.3	12.32

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100797436	MapMan:15.5.2.2	EMBL:ACUP02006822	EnsemblPlantsGene:GLYMA_11G138700	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K7LPN3	EnsemblPlants:KRH29783	ProteinID:KRH29783	ProteinID:KRH29783.1	ProteinID:KRH29784.1	ProteinID:KRH29785.1
InterPro:Myb_dom	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI000294F2CB	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr11:-:10549903..10553595

Molecular Weight (calculated)

77258.3 Da

IEP (calculated)

8.345

GRAVY (calculated)

-0.673

Length

690 amino acids

Sequence
(BLAST)

001: MVLQKRLEYG FNGYQAPAMP RASRSTRRRA KFRRAEDNQK CAFDLLATVA GKLLQERENP TMSSDTSLEK DQCGFVKECQ DANKPSKSEI SDEGSCDNSG
101: FSRLSSQTNK KNCGLKEFTH LAIDGDVGIA SIVTSSSCLE RFIAEKMVDS NSHFKVENVT SKVNLDFSDY PKDSDFKLDG DTSKGKDELH KFEKVPIGSG
201: IDMCNFEDPL DVNPPALISL GGNAKLSGYN DRIPCSLLSK SRDNVPVVSR DDDENSSGCT HPINTETKSF RPKTCIGKRM ASNFQKVAEK TKNYALSNND
301: GDWKRTYLSK RNCNKHQSSQ MNIPFKKRKL FNYRSVANSN GLIRRGGIYY SPENCMNQDG CDSPPGMHKV QIFHADPGMS SLEACQHQTL RSIGSHVNLR
401: IKSFRVPELF IEVPETATIG SLKRTVMDAV TAVLGGELHI GVFLQGKQVK DDSKTLLQTG ISHHNELDAL GFTLEPNSSQ SLPIVCASHS PRPKADITEP
501: VIRYPSSPAV IHQRIQGNSD MLPEHQVTSL GRHFESDHDS APSPVNVSVD KNMKDSKELV TVPEMDEELA MVPVHQKPKR SEIVQRRIRR PFSVDEVEAL
601: VQAVEKLGTG RWRDVKLCAF DNANHRTYVD LKDKWKTLVH TARISPQQRR GEPVPQELLD RVLVAHAYWS QQQTKSQHKH HPETETVFSF

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.