Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 3
- nucleus 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc06g076270.2.1 | Tomato | nucleus | 81.3 | 80.71 |
| PGSC0003DMT400005476 | Potato | nucleus | 57.27 | 57.51 |
| VIT_06s0004g04940.t01 | Wine grape | nucleus | 53.24 | 53.16 |
| KRH23087 | Soybean | nucleus | 45.47 | 44.01 |
| KRH29783 | Soybean | nucleus | 43.45 | 43.77 |
| KRH10245 | Soybean | nucleus | 45.18 | 43.61 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 40.72 | 43.47 |
| KRH24782 | Soybean | nucleus | 38.85 | 42.99 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 38.56 | 41.55 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 41.01 | 41.13 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 41.44 | 40.45 |
| PGSC0003DMT400060234 | Potato | nucleus | 39.86 | 40.2 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 4.89 | 36.96 |
| Os03t0274300-01 | Rice | nucleus | 36.55 | 36.71 |
| PGSC0003DMT400016260 | Potato | nucleus | 35.25 | 36.57 |
| KXG39691 | Sorghum | nucleus, plastid | 36.98 | 36.4 |
| TraesCS4B01G207700.1 | Wheat | nucleus | 35.97 | 36.13 |
| HORVU4Hr1G059800.2 | Barley | nucleus | 35.83 | 36.03 |
| TraesCS4A01G096700.1 | Wheat | nucleus | 35.83 | 36.03 |
| TraesCS4D01G208600.1 | Wheat | nucleus | 35.68 | 35.89 |
| TraesCS3D01G533700.1 | Wheat | nucleus, plastid | 32.52 | 34.77 |
| TraesCS3A01G528500.1 | Wheat | nucleus, plastid | 32.37 | 34.56 |
| TraesCS3B01G597500.1 | Wheat | nucleus, plastid | 32.37 | 34.56 |
| HORVU3Hr1G115540.2 | Barley | nucleus, plastid | 32.23 | 34.04 |
| EES10985 | Sorghum | mitochondrion | 31.37 | 33.54 |
| Zm00001d047808_P001 | Maize | nucleus, plastid | 34.82 | 32.4 |
| Zm00001d028608_P006 | Maize | nucleus | 32.37 | 32.33 |
| TraesCS6A01G392300.1 | Wheat | nucleus | 26.47 | 27.42 |
| TraesCS6B01G432500.1 | Wheat | nucleus | 26.33 | 27.27 |
| TraesCS6D01G378100.1 | Wheat | nucleus | 26.19 | 27.12 |
| HORVU6Hr1G091110.8 | Barley | cytosol, nucleus, plastid | 23.31 | 20.85 |
| Zm00001d025679_P001 | Maize | cytosol, nucleus, plastid | 26.19 | 20.07 |
| Os02t0817800-03 | Rice | nucleus | 12.09 | 13.27 |
Protein Annotations
| Gene3D:1.10.246.220 | EntrezGene:102598179 | MapMan:15.5.2.2 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | UniProt:M1CZ52 | InterPro:Myb_dom | EnsemblPlantsGene:PGSC0003DMG400030324 |
| PGSC:PGSC0003DMG400030324 | EnsemblPlants:PGSC0003DMT400077969 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF38 | InterPro:SANT/Myb |
| SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | UniParc:UPI000296AC63 | InterPro:Ubiquitin-like_domsf | RefSeq:XP_006350780.1 |
| SEG:seg | : | : | : | : | : |
Description
MYBR domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400030324]
Coordinates
chr6:+:56715994..56720030
Molecular Weight (calculated)
76589.0 Da
IEP (calculated)
9.395
GRAVY (calculated)
-0.650
Length
695 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLQKRLDYG FNGYQVPPIP RATRSVRRRG IIRRKADGNG TCPFDLLATV AGKLLGEGES SPDSTGSVRG KEQGAIVKDE KVKEAEDRSL KENSYTEGCY
101: ERGFFISELV SQAPVVNRFL SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFSSKTE REVSGCGVFS SCTLDTENDK QMKIELSNKA
201: KVSTDKGDAI SSSKFPDVWD KKPSTLVTSD ESVKLSLSTY PAPCRSFPVI WNDVKLANKD DDENSGCTRP STPNKASGAA PRVRDQPIKK LLASKYWEEN
301: LKSDDEGHAN SGAKTMHVYY NRNIGYKHQR SQRDFPFKKR KLFKCGSFSN SDGEMSTDGI SSSPTNDLHG NASGSSKASS GGCAAAGTSV FNGGRAFLRP
401: GDSHVKFRIK SFKVPELFVD IPENATIGSL KRTVMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKFDALGF SLEPNPVQTP QPLGQDCRSC
501: VFPYETPQPL TRCPSPSTAV HTGIQQGRSD DHTGTSLSNF IESDHESAPS PHYAALEKIS ANSRALVPLT AVNAEALSAV PLRKPKRSEA TQRRIRRPFS
601: VSEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQMKQPSE TYLIL
101: ERGFFISELV SQAPVVNRFL SELPHVQNDT ISRPASASMS SDCSEKLLFA KQFVNGESSE EHENFSSKTE REVSGCGVFS SCTLDTENDK QMKIELSNKA
201: KVSTDKGDAI SSSKFPDVWD KKPSTLVTSD ESVKLSLSTY PAPCRSFPVI WNDVKLANKD DDENSGCTRP STPNKASGAA PRVRDQPIKK LLASKYWEEN
301: LKSDDEGHAN SGAKTMHVYY NRNIGYKHQR SQRDFPFKKR KLFKCGSFSN SDGEMSTDGI SSSPTNDLHG NASGSSKASS GGCAAAGTSV FNGGRAFLRP
401: GDSHVKFRIK SFKVPELFVD IPENATIGSL KRTVMEAVTA ILGGGLRIGV VFQGKKVRDD NKTLLQTGIS HDYKFDALGF SLEPNPVQTP QPLGQDCRSC
501: VFPYETPQPL TRCPSPSTAV HTGIQQGRSD DHTGTSLSNF IESDHESAPS PHYAALEKIS ANSRALVPLT AVNAEALSAV PLRKPKRSEA TQRRIRRPFS
601: VSEVEALVQA VEKLGTGRWR DVKLRAFDNA KHRTYVDLKD KWKTLVHTAR ISPQQRRGEP VPQELLDRVL TAHAYWSQQQ AKQQMKQPSE TYLIL
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Arabidopsis Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.