Factsheet for Zm00001d047808_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 3
nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG39691	Sorghum	nucleus, plastid	78.85	83.43
Zm00001d028608_P006	Maize	nucleus	68.14	73.13
Os03t0274300-01	Rice	nucleus	65.06	70.23
HORVU4Hr1G059800.2	Barley	nucleus	63.59	68.74
TraesCS4D01G208600.1	Wheat	nucleus	63.45	68.6
TraesCS4A01G096700.1	Wheat	nucleus	63.32	68.45
TraesCS4B01G207700.1	Wheat	nucleus	63.05	68.06
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.82	44.96
GSMUA_Achr8P20810_001	Banana	nucleus	38.69	44.39
VIT_06s0004g04940.t01	Wine grape	nucleus	39.22	42.1
GSMUA_Achr7P15090_001	Banana	nucleus	38.69	41.7
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.82	40.73
Bra015585.1-P	Field mustard	nucleus	31.19	38.96
CDY06712	Canola	nucleus	31.06	38.93
AT3G46590.2	Thale cress	nucleus	28.78	38.88
Solyc06g005590.2.1	Tomato	nucleus	35.61	38.61
CDY10282	Canola	nucleus	30.66	38.17
PGSC0003DMT400005476	Potato	nucleus	35.21	38.01
AT1G07540.1	Thale cress	nucleus	31.59	37.46
AT5G59430.2	Thale cress	nucleus	28.51	36.85
CDY15617	Canola	nucleus	28.92	36.61
KRG99966	Soybean	nucleus	29.45	36.48
Solyc05g054410.2.1	Tomato	nucleus	33.6	36.43
Bra030689.1-P	Field mustard	nucleus	29.59	36.41
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	34.27	36.36
KRH10245	Soybean	nucleus	34.94	36.25
GSMUA_Achr10P...	Banana	cytosol, plastid	4.42	35.87
Bra002566.1-P	Field mustard	nucleus	27.31	35.85
PGSC0003DMT400060234	Potato	nucleus	33.07	35.85
KRH29783	Soybean	nucleus	33.07	35.8
KRH23087	Soybean	nucleus	34.4	35.79
KRH49110	Soybean	nucleus	28.65	35.31
VIT_08s0007g00500.t01	Wine grape	nucleus	32.4	35.23
PGSC0003DMT400077969	Potato	nucleus	32.4	34.82
Solyc06g076270.2.1	Tomato	nucleus	32.4	34.57
KRH24782	Soybean	nucleus	29.05	34.55
KRG97906	Soybean	nucleus	31.06	34.42
KRH30983	Soybean	nucleus	31.19	34.32
Solyc04g011650.2.1	Tomato	nucleus	30.52	34.18
PGSC0003DMT400016260	Potato	nucleus	29.99	33.43
CDX86474	Canola	nucleus	24.23	32.5
Solyc12g027690.1.1	Tomato	extracellular	6.29	30.32
Solyc12g027710.1.1	Tomato	cytosol	8.17	25.21
CDY33039	Canola	nucleus	27.18	24.55
CDX80268	Canola	nucleus	27.18	24.52
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	26.77	22.05

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:542426	UniProt:A0A1D6PDM0	ProteinID:AQL07678.1	ProteinID:AQL07680.1
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930
InterPro:Myb_dom	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF61	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI0008447348	InterPro:Ubiquitin-like_domsf	EnsemblPlantsGene:Zm00001d047808	EnsemblPlants:Zm00001d047808_P001
EnsemblPlants:Zm00001d047808_T001	SEG:seg	:	:	:	:

Description

initiator binding protein1 initiator binding protein1

Coordinates

chr9:-:142331350..142336894

Molecular Weight (calculated)

82033.4 Da

IEP (calculated)

9.806

GRAVY (calculated)

-0.533

Length

747 amino acids

Sequence
(BLAST)

001: MAWAVGESRF EFVGFCLISR RIAANRVPRS DLVSPVSRFA RRSCAPVRFG SGTSHEQRNH QLLTNPLLNF KQPKPRAEMV FQKWSSSSEM ESCGGGQVPE
101: MPRVPKSARG KRSVRKKEAQ SPAQMSAIDL LATVAGKLFD EGAGSLGNTS AGAPALAAFA KDALVKQEQC DEQMKLFKHE ATDQDSCNES AILPHIVLQR
201: VVNNARNEDP KAKSEVQDKE SSMISYTKAE LGCNFGVIAD RWSPESVESG AFTGDAVARL MMTAPAGFHK NAPEMYSLLD SMDVDVKPPP LVSSDSTGEM
301: PLHGDKIHRS TSLPRAPKGV GFFAVDRDDD DDKSSGCTHP STATNKDFTS NCKAEYNRVR KLLTNVERKP SFRYKKMHTR QRTQRSTFKR RKLFDRHLAL
401: ASEFGTANGK GNTKVAGRNS NAVSLEANKG TNSMPFQKSC GSNDCHVKLR IKSFNVPELL VEIPDSATVG SLKKTVLEAV TAILGGGLRV GVLHHGKKVR
501: DDSKTLIQAG IGQDDMLDNL GFSLEPNCTQ NPQVQAPEDV SFLENIDTTE PLARLVNFVW YRITPADSSS KLGEVDVSQE LALTPLAMNY QGSDHDSVHS
601: PGAVSSRDKD SRALFLVPAA DPNAGAVVPA NKTKRSPEQG HRRIRRPFSV AEVEALVLAV EKLGTGRWRD VKLRAFDNAK HRTYVDLKDK WKTLVHTASI
701: SPQQRRGEPV PQELLDRVLA AQAYWSQQQA KLQPKTPSLA EARLLTQ

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.