CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
nucleus 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra015585.1-P	Field mustard	nucleus	96.14	95.82
CDY10282	Canola	nucleus	90.94	90.33
CDY15617	Canola	nucleus	73.99	74.75
CDX86474	Canola	nucleus	66.95	71.63
AT1G07540.1	Thale cress	nucleus	72.32	68.41
CDY30842	Canola	nucleus	23.15	48.94
GSMUA_Achr8P20810_001	Banana	nucleus	42.11	38.56
CDX78540	Canola	nucleus	38.59	37.64
CDX70522	Canola	nucleus	36.24	37.37
GSMUA_Achr10P...	Banana	cytosol, plastid	5.7	36.96
CDY50529	Canola	nucleus	37.58	36.9
CDX85624	Canola	mitochondrion	33.72	36.88
CDY50353	Canola	nucleus	37.58	36.84
CDX91094	Canola	nucleus	34.23	36.62
CDY42156	Canola	nucleus	36.74	35.73
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.62	35.67
CDY08423	Canola	nucleus	36.91	35.54
CDY68172	Canola	nucleus	33.39	35.28
GSMUA_Achr7P15090_001	Banana	nucleus	40.77	35.06
KXG39691	Sorghum	nucleus, plastid	41.28	34.84
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.58	34.73
Os03t0274300-01	Rice	nucleus	40.27	34.68
TraesCS4D01G208600.1	Wheat	nucleus	39.77	34.3
HORVU4Hr1G059800.2	Barley	nucleus	39.77	34.3
TraesCS4A01G096700.1	Wheat	nucleus	39.77	34.3
TraesCS4B01G207700.1	Wheat	nucleus	39.6	34.1
CDX69626	Canola	nucleus	33.39	33.56
TraesCS3D01G533700.1	Wheat	nucleus, plastid	34.56	31.69
TraesCS3A01G528500.1	Wheat	nucleus, plastid	34.56	31.64
HORVU3Hr1G115540.2	Barley	nucleus, plastid	34.73	31.46
TraesCS3B01G597500.1	Wheat	nucleus, plastid	34.06	31.18
Zm00001d047808_P001	Maize	nucleus, plastid	38.93	31.06
Zm00001d028608_P006	Maize	nucleus	35.4	30.32
EES10985	Sorghum	mitochondrion	32.21	29.54
CDY33039	Canola	nucleus	36.41	26.24
CDX80268	Canola	nucleus	36.07	25.97
TraesCS6D01G378100.1	Wheat	nucleus	27.18	24.14
TraesCS6A01G392300.1	Wheat	nucleus	27.01	23.99
TraesCS6B01G432500.1	Wheat	nucleus	26.85	23.84
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.83	18.28
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	27.18	17.86
Os02t0817800-03	Rice	nucleus	12.08	11.37

Protein Annotations

EnsemblPlants:CDY06712	EnsemblPlantsGene:GSBRNA2T00122894001	Gene3D:1.10.246.220	GO:A0A078F0P9	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb
PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	PFscan:PS51294	ProteinID:CDY06712	ProteinID:CDY06712.1	SEG:seg
SMART:SM00717	SUPFAM:SSF46689	UniParc:UPI0004EEC728	MapMan:15.5.2.2	:	:

Description

BnaA10g04910D

Coordinates

chrLK031972:-:422975..425621

Molecular Weight (calculated)

66682.5 Da

IEP (calculated)

10.038

GRAVY (calculated)

-0.671

Length

596 amino acids

Sequence
(BLAST)

001: MVLQRRLDHG FNGYEVPPTP RATRSPRKSA FKKNQISSFD LLAAVAGDLL LESGGNSSSS SNNAIGDTNE EDQCAVKTKP HQTVVEEINC DHIHDNNAER
101: RFFVSEILPK THRSPSPPKD FHFGSTSGIT SDSSEKLGTQ GLGQSVCFRS ETNDKISMHG RLINDCEPEL SRDIIAENKH HIGSGFKKPV PPPVCSDDID
201: LLNDDGENFS ARYTTKTFRS TLRIGDRRIK KVLASKYCKL SSKQKETTVT NSDMDLKPNY YNKKHCLKSL RSERRYPIKK RRYFDGYTAS QSEETPKRAF
301: MSTIACQKQP ALQSRDSHVK LGIKSFKVPE LFIEIPETAT VGSLKRAVLE AVTTILEGGL RIGVLVHGKK VRDDSKMLLQ NGISLDTLSD TLGFCLEPNP
401: PHSTKPLSPE DSDCLRPFNV PHTLTRCLAS QGKHAKPSNS VESDLDSKPS APNRAKPVYS RALIPVAPPL HAQALNVVPP RKPKRSEVAQ RRIRRPFSVA
501: EVEVLVQAVE RLGTGRWRDV KLRAFDNAKH RTYVDLKDKW KTLVHTARIS PQQRRGEPVP QELLDRVLMA HAYWSQQQGK QQLLEGPQKL ETSLGL

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.