Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY15617 | Canola | nucleus | 68.57 | 73.22 |
| Bra015585.1-P | Field mustard | nucleus | 68.89 | 72.58 |
| CDY10282 | Canola | nucleus | 68.89 | 72.33 |
| CDY06712 | Canola | nucleus | 68.41 | 72.32 |
| Bra030689.1-P | Field mustard | nucleus | 69.37 | 71.99 |
| CDX86474 | Canola | nucleus | 61.43 | 69.48 |
| AT3G46590.2 | Thale cress | nucleus | 38.25 | 43.58 |
| AT3G53790.1 | Thale cress | nucleus | 27.62 | 43.5 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 41.75 | 40.4 |
| AT5G59430.2 | Thale cress | nucleus | 36.83 | 40.14 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.7 | 37.78 |
| AT3G12560.2 | Thale cress | nucleus | 36.83 | 37.48 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 41.11 | 37.37 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 37.62 | 36.74 |
| AT5G13820.1 | Thale cress | nucleus | 36.67 | 36.09 |
| KXG39691 | Sorghum | nucleus, plastid | 39.52 | 35.27 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 5.08 | 34.78 |
| Os03t0274300-01 | Rice | nucleus | 37.94 | 34.54 |
| HORVU4Hr1G059800.2 | Barley | nucleus | 37.14 | 33.86 |
| TraesCS4B01G207700.1 | Wheat | nucleus | 37.14 | 33.81 |
| TraesCS4D01G208600.1 | Wheat | nucleus | 36.98 | 33.72 |
| TraesCS4A01G096700.1 | Wheat | nucleus | 36.98 | 33.72 |
| TraesCS3D01G533700.1 | Wheat | nucleus, plastid | 33.02 | 32.0 |
| TraesCS3A01G528500.1 | Wheat | nucleus, plastid | 33.02 | 31.95 |
| HORVU3Hr1G115540.2 | Barley | nucleus, plastid | 33.17 | 31.76 |
| TraesCS3B01G597500.1 | Wheat | nucleus, plastid | 32.7 | 31.64 |
| Zm00001d047808_P001 | Maize | nucleus, plastid | 37.46 | 31.59 |
| EES10985 | Sorghum | mitochondrion | 32.22 | 31.23 |
| Zm00001d028608_P006 | Maize | nucleus | 34.13 | 30.89 |
| TraesCS6A01G392300.1 | Wheat | nucleus | 26.19 | 24.59 |
| TraesCS6B01G432500.1 | Wheat | nucleus | 26.19 | 24.59 |
| TraesCS6D01G378100.1 | Wheat | nucleus | 26.03 | 24.44 |
| Zm00001d025679_P001 | Maize | cytosol, nucleus, plastid | 27.46 | 19.07 |
| HORVU6Hr1G091110.8 | Barley | cytosol, nucleus, plastid | 23.02 | 18.66 |
| Os02t0817800-03 | Rice | nucleus | 11.75 | 11.69 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | EntrezGene:837268 | ProteinID:AAF79547.1 | ProteinID:AEE28140.1 | ArrayExpress:AT1G07540 |
| EnsemblPlantsGene:AT1G07540 | RefSeq:AT1G07540 | TAIR:AT1G07540 | RefSeq:AT1G07540-TAIR-G | EnsemblPlants:AT1G07540.1 | TAIR:AT1G07540.1 |
| EMBL:AY519535 | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0003691 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031627 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom |
| RefSeq:NP_001318943.1 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF38 | UniProt:Q6R0E3 | InterPro:SANT/Myb | SMART:SM00717 |
| SUPFAM:SSF46689 | Symbol:TRFL2 | UniParc:UPI000150577D | SEG:seg | : | : |
Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
Coordinates
chr1:-:2318143..2321664
Molecular Weight (calculated)
70189.6 Da
IEP (calculated)
9.850
GRAVY (calculated)
-0.794
Length
630 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.