Factsheet for AT3G46590.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT5G59430.2	Thale cress	nucleus	55.52	53.11
AT3G53790.1	Thale cress	nucleus	30.38	42.0
AT1G07540.1	Thale cress	nucleus	43.58	38.25
GSMUA_Achr8P20810_001	Banana	nucleus	42.68	36.25
AT3G12560.2	Thale cress	nucleus	40.51	36.19
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	40.87	35.04
GSMUA_Achr10P...	Banana	cytosol, plastid	5.61	33.7
GSMUA_Achr7P15090_001	Banana	nucleus	41.95	33.48
Os03t0274300-01	Rice	nucleus	41.23	32.95
AT5G13820.1	Thale cress	nucleus	37.97	32.81
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.13	32.72
KXG39691	Sorghum	nucleus, plastid	40.87	32.01
TraesCS4A01G096700.1	Wheat	nucleus	39.42	31.55
HORVU4Hr1G059800.2	Barley	nucleus	39.24	31.4
TraesCS4D01G208600.1	Wheat	nucleus	39.24	31.4
TraesCS4B01G207700.1	Wheat	nucleus	39.24	31.36
HORVU3Hr1G115540.2	Barley	nucleus, plastid	36.89	31.0
TraesCS3D01G533700.1	Wheat	nucleus, plastid	36.35	30.92
TraesCS3A01G528500.1	Wheat	nucleus, plastid	36.35	30.88
TraesCS3B01G597500.1	Wheat	nucleus, plastid	35.8	30.41
EES10985	Sorghum	mitochondrion	34.36	29.23
Zm00001d047808_P001	Maize	nucleus, plastid	38.88	28.78
Zm00001d028608_P006	Maize	nucleus	35.62	28.3
TraesCS6A01G392300.1	Wheat	nucleus	30.38	25.04
TraesCS6D01G378100.1	Wheat	nucleus	30.02	24.74
TraesCS6B01G432500.1	Wheat	nucleus	29.84	24.59
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	27.12	19.3
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	28.93	17.64
Os02t0817800-03	Rice	nucleus	14.1	12.32

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	EntrezGene:823812	UniProt:A0A178VGD9	ProteinID:AEE78175.1
ProteinID:AEE78176.1	ProteinID:AEE78177.1	EMBL:AJ630475	EMBL:AK229705	ArrayExpress:AT3G46590	EnsemblPlantsGene:AT3G46590
RefSeq:AT3G46590	TAIR:AT3G46590	RefSeq:AT3G46590-TAIR-G	EnsemblPlants:AT3G46590.2	TAIR:AT3G46590.2	EMBL:AY062489
EMBL:AY090966	EMBL:AY395985	EMBL:AY519541	EMBL:AY568647	EMBL:BT033142	ProteinID:CAB62329.1
GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006259	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0008301
GO:GO:0009058	GO:GO:0009719	GO:GO:0009723	GO:GO:0009737	GO:GO:0009739	GO:GO:0009751
GO:GO:0009753	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	GO:GO:0042162	GO:GO:0046686
InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_001030821.1	RefSeq:NP_001030822.2
RefSeq:NP_190243.2	ProteinID:OAP04814.1	PO:PO:0000013	PO:PO:0000037	PO:PO:0000230	PO:PO:0000293
PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064
PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611
PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010
PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046
PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137
PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717
PANTHER:PTHR21717:SF38	UniProt:Q9SNB9	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236
Symbol:TRFL1	UniParc:UPI00000A855A	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	:	:

Description

TRP2Telomere repeat-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB9]

Coordinates

chr3:+:17152460..17156240

Molecular Weight (calculated)

61778.2 Da

IEP (calculated)

9.568

GRAVY (calculated)

-0.635

Length

553 amino acids

Sequence
(BLAST)

001: MVSHKVLEFG DDGYKLPAQA RAPRSLRKKR IYEKKIPGDD KMCAIDLLAT VAGSLLLESK SPVNACLVVQ NTVKNEYPAD ENPVKAVPYS ESPSLFDNGK
101: CGFSSVITNP NHLLVGDKVG KEVEGFSSLG VSGDVKPDVV ASIGSNSSTE VGACGNGSPN ESRDDVNLFS RNDDDENFSG YIRTRMTRPV PRIGDRRIRK
201: ILASRHWKGG SKNNTDAKPW YCSKRSYYLH HHQRSYPIKK RKYFDSVYDS NSDDYRLQGK THKGSRTISS MKSRNASFVS RDHHVKLRIK SFRVPELFVE
301: IPETATVGSL KRMVMEAVTT ILGDGLRVGL MVQGKKVRDD GKTLLQTGIS EENNHLDSLG FSLEPSLETT PQPLLSSYLS DHACDDVTLC HDNALDSSHE
401: PEPSPADSFG KLGTSDHSRA LIPVASAAML APRPPNRKFK RTEQQLAAQR RIRRPFSVTE VEALVQAVEK LGTGRWRDVK VRAFEDADHR TYVDLKDKWK
501: TLVHTARISP QQRRGEPVPQ ELLDRVLKAH AYWSQHLMHQ LQTEPPSTQV EAL

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.