Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G208600.1 | Wheat | nucleus | 98.12 | 98.26 |
| HORVU4Hr1G059800.2 | Barley | nucleus | 97.98 | 98.12 |
| TraesCS4A01G096700.1 | Wheat | nucleus | 97.83 | 97.97 |
| Os03t0274300-01 | Rice | nucleus | 81.36 | 81.36 |
| KXG39691 | Sorghum | nucleus, plastid | 74.28 | 72.8 |
| Zm00001d028608_P006 | Maize | nucleus | 66.47 | 66.09 |
| Zm00001d047808_P001 | Maize | nucleus, plastid | 68.06 | 63.05 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 42.63 | 45.31 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 41.04 | 44.03 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 43.21 | 43.15 |
| VIT_06s0004g04940.t01 | Wine grape | nucleus | 42.05 | 41.81 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.63 | 41.43 |
| Bra015585.1-P | Field mustard | nucleus | 34.68 | 40.13 |
| CDY06712 | Canola | nucleus | 34.1 | 39.6 |
| AT3G46590.2 | Thale cress | nucleus | 31.36 | 39.24 |
| Solyc06g005590.2.1 | Tomato | nucleus | 39.02 | 39.19 |
| PGSC0003DMT400005476 | Potato | nucleus | 38.73 | 38.73 |
| CDY10282 | Canola | nucleus | 33.53 | 38.67 |
| TraesCS3B01G597500.1 | Wheat | nucleus, plastid | 35.4 | 37.63 |
| CDY15617 | Canola | nucleus | 31.79 | 37.29 |
| AT5G59430.2 | Thale cress | nucleus | 31.07 | 37.2 |
| AT1G07540.1 | Thale cress | nucleus | 33.81 | 37.14 |
| Bra030689.1-P | Field mustard | nucleus | 32.23 | 36.74 |
| Solyc05g054410.2.1 | Tomato | nucleus | 36.42 | 36.57 |
| KRH23087 | Soybean | nucleus | 37.86 | 36.49 |
| KRH10245 | Soybean | nucleus | 37.86 | 36.39 |
| KRH29783 | Soybean | nucleus | 36.13 | 36.23 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 36.71 | 36.08 |
| Solyc06g076270.2.1 | Tomato | nucleus | 36.42 | 36.0 |
| KRG99966 | Soybean | nucleus | 31.36 | 35.99 |
| PGSC0003DMT400077969 | Potato | nucleus | 36.13 | 35.97 |
| PGSC0003DMT400060234 | Potato | nucleus | 35.69 | 35.85 |
| Bra002566.1-P | Field mustard | nucleus | 29.19 | 35.5 |
| KRG97906 | Soybean | nucleus | 34.39 | 35.31 |
| KRH49110 | Soybean | nucleus | 30.78 | 35.15 |
| KRH30983 | Soybean | nucleus | 34.39 | 35.05 |
| PGSC0003DMT400016260 | Potato | nucleus | 33.81 | 34.93 |
| KRH24782 | Soybean | nucleus | 31.65 | 34.87 |
| Solyc04g011650.2.1 | Tomato | nucleus | 33.53 | 34.78 |
| VIT_08s0007g00500.t01 | Wine grape | nucleus | 33.81 | 34.06 |
| CDX86474 | Canola | nucleus | 27.17 | 33.75 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 4.48 | 33.7 |
| Solyc12g027690.1.1 | Tomato | extracellular | 6.94 | 30.97 |
| TraesCS6B01G432500.1 | Wheat | nucleus | 29.62 | 30.55 |
| Solyc12g027710.1.1 | Tomato | cytosol | 8.53 | 24.38 |
| CDX80268 | Canola | nucleus | 29.05 | 24.28 |
| CDY33039 | Canola | nucleus | 28.9 | 24.18 |
Protein Annotations
| EnsemblPlants:TraesCS4B01G207700.1 | EnsemblPlantsGene:TraesCS4B01G207700 | Gene3D:1.10.246.220 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 |
| GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb | InterPro:Ubiquitin-like_domsf |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF61 | PFscan:PS51294 | SEG:seg | SMART:SM00717 | SUPFAM:SSF46689 |
| SUPFAM:SSF54236 | TIGR:cd11660 | MapMan:15.5.2.2 | : | : | : |
Description
No Description!
Coordinates
chr4B:-:443814399..443817776
Molecular Weight (calculated)
75380.9 Da
IEP (calculated)
8.630
GRAVY (calculated)
-0.645
Length
692 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFQKRTSSE MESCGGSHVA EMPRVPKSAR GKRSVRKKES QGQAMCAFDL LATVAGKLLD EGEGSLGNMS AGSPVLAASA KDVCVKQEQC DEEGKHLKND
101: VMDQDSCNES ALISHIASQR LADHHSWKGE DLNEVPKAKS EAVDKEPSMI SCTKADLGSN FGAIADRWSP ESVESGAFTG DAAANVMALA AAAYNKNAPD
201: MYNLLDPMDV DVKPPPLVSS DSTGEMPLYG GKIHKSVSFP RGPKGGAEYS VDRENDDDDD DKSSGCTHSS TATNRGLRPN CTADQSRVKK FLACKYRKVA
301: PARMHKGDLS YSDADRKPSF RNKKMYYTRQ RTQRSTFKRR KMLDRHSTLV SEEFAKSNAK RTTKVNAREP HAASLEANKG SNSMPFHGSC KSNDCHVKLK
401: IKSFKVPELL IEIPETASVG SLKKTVLEAV NAMLGGGLRV GVLHHGKKIR DDSKTLMQAG IDHDDMLDNI GFSLEPNCTR HSSQLAAPED IEFLETVETT
501: EPLARIAPAD SSSKHGEVDA SQELALTPLT ANYQGNDHDS VHSPGGISSP EKASANSRAI VPVTPVDSSA GAIVPANKAK RSSEQGQRRI RRPFSVAEVE
601: ALVLAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQDL LDRVLAAQSY WSQQQAKLQP KTPPLAEARL LT
101: VMDQDSCNES ALISHIASQR LADHHSWKGE DLNEVPKAKS EAVDKEPSMI SCTKADLGSN FGAIADRWSP ESVESGAFTG DAAANVMALA AAAYNKNAPD
201: MYNLLDPMDV DVKPPPLVSS DSTGEMPLYG GKIHKSVSFP RGPKGGAEYS VDRENDDDDD DKSSGCTHSS TATNRGLRPN CTADQSRVKK FLACKYRKVA
301: PARMHKGDLS YSDADRKPSF RNKKMYYTRQ RTQRSTFKRR KMLDRHSTLV SEEFAKSNAK RTTKVNAREP HAASLEANKG SNSMPFHGSC KSNDCHVKLK
401: IKSFKVPELL IEIPETASVG SLKKTVLEAV NAMLGGGLRV GVLHHGKKIR DDSKTLMQAG IDHDDMLDNI GFSLEPNCTR HSSQLAAPED IEFLETVETT
501: EPLARIAPAD SSSKHGEVDA SQELALTPLT ANYQGNDHDS VHSPGGISSP EKASANSRAI VPVTPVDSSA GAIVPANKAK RSSEQGQRRI RRPFSVAEVE
601: ALVLAVEKLG TGRWRDVKLR AFDNAKHRTY VDLKDKWKTL VHTASISPQQ RRGEPVPQDL LDRVLAAQSY WSQQQAKLQP KTPPLAEARL LT
001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL
Arabidopsis Description
TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.