CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33039	Canola	nucleus	97.83	97.94
AT5G59430.2	Thale cress	nucleus	50.0	71.63
CDY30842	Canola	nucleus	14.25	41.84
CDY06712	Canola	nucleus	25.97	36.07
CDY10282	Canola	nucleus	25.12	34.67
GSMUA_Achr8P20810_001	Banana	nucleus	27.17	34.56
CDX85624	Canola	mitochondrion	22.71	34.5
CDY50529	Canola	nucleus	25.24	34.43
CDY68172	Canola	nucleus	23.43	34.4
CDX91094	Canola	nucleus	23.07	34.29
CDY42156	Canola	nucleus	25.36	34.26
CDY08423	Canola	nucleus	25.6	34.25
CDX78540	Canola	nucleus	25.24	34.21
CDX70522	Canola	nucleus	23.67	33.91
GSMUA_Achr10P...	Banana	cytosol, plastid	3.74	33.7
CDY15617	Canola	nucleus	23.91	33.56
CDY50353	Canola	nucleus	24.64	33.55
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	25.97	33.33
GSMUA_Achr7P15090_001	Banana	nucleus	27.17	32.47
CDX69626	Canola	nucleus	23.19	32.38
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	27.54	32.02
Os03t0274300-01	Rice	nucleus	25.36	30.35
CDX86474	Canola	nucleus	20.17	29.98
KXG39691	Sorghum	nucleus, plastid	25.48	29.89
TraesCS4D01G208600.1	Wheat	nucleus	24.4	29.23
TraesCS4A01G096700.1	Wheat	nucleus	24.4	29.23
TraesCS4B01G207700.1	Wheat	nucleus	24.28	29.05
HORVU4Hr1G059800.2	Barley	nucleus	24.03	28.8
TraesCS3D01G533700.1	Wheat	nucleus, plastid	22.46	28.62
HORVU3Hr1G115540.2	Barley	nucleus, plastid	22.58	28.42
TraesCS3A01G528500.1	Wheat	nucleus, plastid	22.22	28.26
TraesCS3B01G597500.1	Wheat	nucleus, plastid	22.22	28.26
EES10985	Sorghum	mitochondrion	21.86	27.85
Zm00001d047808_P001	Maize	nucleus, plastid	24.52	27.18
Zm00001d028608_P006	Maize	nucleus	21.62	25.72
TraesCS6A01G392300.1	Wheat	nucleus	19.81	24.44
TraesCS6B01G432500.1	Wheat	nucleus	19.81	24.44
TraesCS6D01G378100.1	Wheat	nucleus	19.81	24.44
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	18.24	19.43
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	20.89	19.07
Os02t0817800-03	Rice	nucleus	8.82	11.53

Protein Annotations

KEGG:00240+2.7.4.9	Gene3D:1.10.246.220	MapMan:15.5.2.2	Gene3D:3.10.20.90	Gene3D:3.40.50.300	MapMan:6.3.2.3
GO:A0A078CYT1	EnsemblPlants:CDX80268	ProteinID:CDX80268	ProteinID:CDX80268.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003677	GO:GO:0003824	GO:GO:0004798	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0006139	GO:GO:0006233	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016301	GO:GO:0016740	EnsemblPlantsGene:GSBRNA2T00133249001	InterPro:Homeobox-like_sf	InterPro:IPR000626
InterPro:IPR017930	HAMAP:MF_00165	InterPro:Myb_dom	InterPro:P-loop_NTPase	PFAM:PF02223	ScanProsite:PS01331
PFscan:PS50053	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF38	MetaCyc:PWY-6545	MetaCyc:PWY-7184
MetaCyc:PWY-7187	MetaCyc:PWY-7197	MetaCyc:PWY-7198	MetaCyc:PWY-7210	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF52540	SUPFAM:SSF54236	TIGRFAMs:TIGR00041	InterPro:Thymidylate_kin_CS	InterPro:Thymidylate_kinase
UniParc:UPI0004EE56D1	InterPro:Ubiquitin-like_domsf	InterPro:Ubiquitin_dom	SEG:seg	:	:

Description

BnaC09g34740D

Coordinates

chrLK031820:-:976866..982345

Molecular Weight (calculated)

92499.5 Da

IEP (calculated)

8.672

GRAVY (calculated)

-0.567

Length

828 amino acids

Sequence
(BLAST)

001: MVSHKCVEEF SLQFPANARA PRSARKRRSF TKEEISENDK TCAIDLLATV AENLLSESAS SHMSIDKPVE DHCLVKEEFP VEDKPLKPAT LPEFNPYQGS
101: SMSPCGFSSV INGKVEIEAE GFSLSGGIDS CQAGQDLKPG IDGGAVVLDA RPNGVGSLGG SSSRTKVPSM GAGASLGALD DVHMFSRDDD ENFSGYICPR
201: VTKKSPRSVP RVGDRRIRKI LASRHWKGGS RHSEAKSWRN YYLHHQRSYP IKKRKYFDHI SDSVSDDYRL RSKMQRGSRA VSTMKGPGAS FVSSDSHVRL
301: RIKSFRVPEL FVEIPETATV GSLKRMVMEA VSTLLSDGHR VGLMVQGKKV RDDNKTLHQT GISQDNTHLD SLDFSLEPSS EAPHLLSSNP SGHVCEELPM
401: CHASDMDTLF KTEPDLALFP SGSFDKETAA DDSKALVLAA LTELSPPQPP RHKSNKQQQQ QHQTAQRRMR RPFSVTEVEA LVQAVEKLGT GRWRDVKHSA
501: FEDADHRTYV DLKDKWKTLV HTAKISPQQR RGEPVPQELL NRVLNAHGYW SQQHMETLAL PKPDYNPATF HTTWTNLLLM FRTSIGSSFR ALALPPRSFN
601: YLSRSSIRME NLTFSSEAGA KPRGALIVVE GLDRSGKSTQ CVKLRSFLES SGHPTELWRF PDRETSVGQM ISAYLSNKSQ LDDRTIHLLF SANRWEKRSL
701: MEEKLKTGTT LIVDRYSYSG VAFSSAKGLG IEWCKAPEVG LLAPDSVLYL DISPERAAER GGYGDERYER VDFQRKVSEF YQTLRDSSWK IIDAGETMEE
801: VEKKIQQVVL DKVKECAQGK SLSLLWSS

Best Arabidopsis Sequence Match ( AT5G59430.3 )
(BLAST)

001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQHLGGRL SFVYYYYY

Arabidopsis Description

TRP1Telomere repeat-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.