Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038729.1-P | Field mustard | nucleus | 97.03 | 96.56 |
| CDY50353 | Canola | nucleus | 90.28 | 90.13 |
| AT3G12560.2 | Thale cress | nucleus | 73.48 | 72.05 |
| CDY08423 | Canola | nucleus | 72.98 | 71.57 |
| CDY42156 | Canola | nucleus | 71.17 | 70.47 |
| CDX85624 | Canola | mitochondrion | 48.76 | 54.31 |
| CDX91094 | Canola | nucleus | 49.59 | 54.04 |
| CDX78540 | Canola | nucleus | 53.38 | 53.03 |
| CDX70522 | Canola | nucleus | 48.6 | 51.04 |
| CDY68172 | Canola | nucleus | 44.98 | 48.4 |
| CDX69626 | Canola | nucleus | 46.79 | 47.89 |
| CDY30842 | Canola | nucleus | 19.93 | 42.91 |
| KRG97906 | Soybean | nucleus | 46.95 | 42.28 |
| KRH30983 | Soybean | nucleus | 46.79 | 41.83 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.63 | 39.35 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.49 | 38.32 |
| Solyc05g054410.2.1 | Tomato | nucleus | 42.67 | 37.59 |
| CDY06712 | Canola | nucleus | 36.9 | 37.58 |
| CDY10282 | Canola | nucleus | 36.41 | 36.83 |
| PGSC0003DMT400016260 | Potato | nucleus | 40.53 | 36.72 |
| Solyc04g011650.2.1 | Tomato | nucleus | 39.7 | 36.13 |
| CDY15617 | Canola | nucleus | 35.09 | 36.1 |
| CDX86474 | Canola | nucleus | 30.48 | 33.21 |
| CDX80268 | Canola | nucleus | 34.43 | 25.24 |
| CDY33039 | Canola | nucleus | 34.1 | 25.03 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078IMD4 | UniProt:A0A078IMD4 | EnsemblPlants:CDY50529 | ProteinID:CDY50529 |
| ProteinID:CDY50529.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00096951001 | InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFscan:PS50053 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| SUPFAM:SSF54236 | UniParc:UPI0004EEDB10 | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
BnaA01g30510DBnaA01g30510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMD4]
Coordinates
chrLK032921:-:19527..23158
Molecular Weight (calculated)
67489.5 Da
IEP (calculated)
8.681
GRAVY (calculated)
-0.686
Length
607 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLDCV SVGFDYPNIP KAPRSCRRKV VNKRTDAMDL LASLAGKLLE ECESSSASSN AFEVNNHENC RKEIKQEDHL KSESSDQGNS VSRPTYEKTC
101: VVNSFSFSDD GILERTPVCE TKNVKCEGVT EERGDVIVNT GFEQDGGLGA DAFNLEDATA LGVQFPKSVC VDGDVKSPSC LNKTPNGSLD RQGNHTKLGR
201: DDDEKLYSYH KFSSKFKSYR SPTIRRIRKS LSSKYWKQMA KEFGHYRADV GVKALYRKRK SCYGYNAWQR ETIYKRRRSP DRSSVVTSDG GLSSGSVSKL
301: PEKRDSVKLS IKSFRIPELF IEVPESATVG SLKRTVMEAV SVLLSGGIRV GVLVHGKKIR DDKKTLSQSG ISSEENLTNL GFTLEPGPSK APLPLCSQDP
401: LVPIDPTNLS ERSAVSPTLD TETPHPDDVA NPGNTVDNNH LELVPYQKEI TVDEEEPSTD PRALVPLPAL EVEALAIVPL NQKPKRSELA QRRTRRPFSV
501: TEVEALVQAV EELGTGRWRD VKLRAFEDAD HRTYVDLKDK WKTLVHTASI SPQQRRGEPV PQELLDRVLR AYGYWSQHQG KHQGRGGGAH KDSDMNRGRA
601: VEAGVSV
101: VVNSFSFSDD GILERTPVCE TKNVKCEGVT EERGDVIVNT GFEQDGGLGA DAFNLEDATA LGVQFPKSVC VDGDVKSPSC LNKTPNGSLD RQGNHTKLGR
201: DDDEKLYSYH KFSSKFKSYR SPTIRRIRKS LSSKYWKQMA KEFGHYRADV GVKALYRKRK SCYGYNAWQR ETIYKRRRSP DRSSVVTSDG GLSSGSVSKL
301: PEKRDSVKLS IKSFRIPELF IEVPESATVG SLKRTVMEAV SVLLSGGIRV GVLVHGKKIR DDKKTLSQSG ISSEENLTNL GFTLEPGPSK APLPLCSQDP
401: LVPIDPTNLS ERSAVSPTLD TETPHPDDVA NPGNTVDNNH LELVPYQKEI TVDEEEPSTD PRALVPLPAL EVEALAIVPL NQKPKRSELA QRRTRRPFSV
501: TEVEALVQAV EELGTGRWRD VKLRAFEDAD HRTYVDLKDK WKTLVHTASI SPQQRRGEPV PQELLDRVLR AYGYWSQHQG KHQGRGGGAH KDSDMNRGRA
601: VEAGVSV
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.