Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY50529 | Canola | nucleus | 90.13 | 90.28 |
| CDY08423 | Canola | nucleus | 72.37 | 71.08 |
| AT3G12560.2 | Thale cress | nucleus | 72.2 | 70.92 |
| CDY42156 | Canola | nucleus | 71.05 | 70.47 |
| CDX85624 | Canola | mitochondrion | 49.01 | 54.68 |
| CDX91094 | Canola | nucleus | 49.34 | 53.86 |
| CDX78540 | Canola | nucleus | 52.8 | 52.54 |
| CDX70522 | Canola | nucleus | 48.52 | 51.04 |
| CDY68172 | Canola | nucleus | 44.74 | 48.23 |
| CDX69626 | Canola | nucleus | 46.71 | 47.89 |
| CDY30842 | Canola | nucleus | 19.9 | 42.91 |
| KRH30983 | Soybean | nucleus | 46.88 | 41.97 |
| KRG97906 | Soybean | nucleus | 46.38 | 41.84 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.72 | 39.49 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.42 | 38.32 |
| Solyc05g054410.2.1 | Tomato | nucleus | 42.76 | 37.74 |
| CDY06712 | Canola | nucleus | 36.84 | 37.58 |
| CDY10282 | Canola | nucleus | 36.84 | 37.33 |
| CDY15617 | Canola | nucleus | 36.18 | 37.29 |
| PGSC0003DMT400016260 | Potato | nucleus | 39.31 | 35.67 |
| Solyc04g011650.2.1 | Tomato | nucleus | 38.65 | 35.23 |
| CDX86474 | Canola | nucleus | 31.41 | 34.29 |
| CDX80268 | Canola | nucleus | 33.55 | 24.64 |
| CDY33039 | Canola | nucleus | 33.22 | 24.43 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | GO:A0A078IMV3 | UniProt:A0A078IMV3 | EnsemblPlants:CDY50353 | ProteinID:CDY50353 |
| ProteinID:CDY50353.1 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003677 | GO:GO:0005488 | GO:GO:0005515 |
| EnsemblPlantsGene:GSBRNA2T00096469001 | InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | PFscan:PS50053 |
| PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 |
| SUPFAM:SSF54236 | UniParc:UPI0004EE16CA | InterPro:Ubiquitin-like_domsf | InterPro:Ubiquitin_dom | SEG:seg | : |
Description
BnaC01g38480DBnaC01g38480D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IMV3]
Coordinates
chrLK032902:-:96703..100266
Molecular Weight (calculated)
67497.5 Da
IEP (calculated)
8.362
GRAVY (calculated)
-0.682
Length
608 amino acids
Sequence
(BLAST)
(BLAST)
001: MVFKRKLDCV SVGFDYPNIP KAPRSCRRKI INKRTDAMDL LASLAGKLLE ECESSSASSN AFEVNNHESF GKEIKQEDHL KSESSDQGDS VSRPTYEKTC
101: VVNSFSFPDD GILERTPVSE TKNVKSEGVA EETGDVIVNT GFERDGGLGA DACNLEDATA LGVQFQKSVC VDGDLKSPSR VNGSLARQGN HTKLGRDDDD
201: DDDDEKLYSY HKFSSKFKSY RSPTIRRIKK SLSSKYWKQM AKDLGHYRAD AGVKALYRKR KSCYGYNAWQ RETIYKRRRS PDRSSVVTSE GGLSSGSVSK
301: LPEKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKI RDDKKTLSQT GISSEENLTN LGFTLEPGPS KAPLPLCSQD
401: PLVPIDPTNL SERSAASPTL DTETPHPDDV ANPGNIVDNN HLELVLYQKE ITVDEEKPSS DPRALVPLPS LEAEALAIVP LNQKPKRTEL AQRRTRRPFS
501: VTEVEALVQA VEELGTGRWR DVKLRAFEDA DHRTYVDLKD KWKTLVHTAS ISPQQRRGEP VPQELLDRVL RAYGYWSQHQ GKHQGRGAAA HKDLDMNRGR
601: ALESGVSV
101: VVNSFSFPDD GILERTPVSE TKNVKSEGVA EETGDVIVNT GFERDGGLGA DACNLEDATA LGVQFQKSVC VDGDLKSPSR VNGSLARQGN HTKLGRDDDD
201: DDDDEKLYSY HKFSSKFKSY RSPTIRRIKK SLSSKYWKQM AKDLGHYRAD AGVKALYRKR KSCYGYNAWQ RETIYKRRRS PDRSSVVTSE GGLSSGSVSK
301: LPEKRDSVKL SIKSFRIPEL FIEVPETATV GSLKRTVMEA VSVLLSGGIR VGVLVHGKKI RDDKKTLSQT GISSEENLTN LGFTLEPGPS KAPLPLCSQD
401: PLVPIDPTNL SERSAASPTL DTETPHPDDV ANPGNIVDNN HLELVLYQKE ITVDEEKPSS DPRALVPLPS LEAEALAIVP LNQKPKRTEL AQRRTRRPFS
501: VTEVEALVQA VEELGTGRWR DVKLRAFEDA DHRTYVDLKD KWKTLVHTAS ISPQQRRGEP VPQELLDRVL RAYGYWSQHQ GKHQGRGAAA HKDLDMNRGR
601: ALESGVSV
001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV
Arabidopsis Description
TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.