Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| CDY28683 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G13820.1 | CDY28683 | AT3G01320.1 | 19962994 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78540 | Canola | nucleus | 80.1 | 75.78 |
| CDX85624 | Canola | mitochondrion | 55.54 | 58.9 |
| CDX91094 | Canola | nucleus | 56.57 | 58.71 |
| AT5G13820.1 | Thale cress | nucleus | 62.8 | 56.72 |
| CDY68172 | Canola | nucleus | 54.67 | 56.03 |
| CDX69626 | Canola | nucleus | 55.88 | 54.47 |
| CDY08423 | Canola | nucleus | 53.11 | 49.6 |
| CDY42156 | Canola | nucleus | 52.6 | 49.59 |
| CDY50529 | Canola | nucleus | 51.04 | 48.6 |
| CDY50353 | Canola | nucleus | 51.04 | 48.52 |
| CDY30842 | Canola | nucleus | 21.28 | 43.62 |
| KRG97906 | Soybean | nucleus | 45.67 | 39.17 |
| KRH30983 | Soybean | nucleus | 45.5 | 38.73 |
| VIT_13s0019g01670.t01 | Wine grape | nucleus, plastid | 45.67 | 37.5 |
| PGSC0003DMT400060234 | Potato | nucleus | 43.6 | 36.57 |
| Solyc05g054410.2.1 | Tomato | nucleus | 43.43 | 36.43 |
| CDY06712 | Canola | nucleus | 37.37 | 36.24 |
| CDY10282 | Canola | nucleus | 37.02 | 35.67 |
| CDY15617 | Canola | nucleus | 35.81 | 35.08 |
| Solyc04g011650.2.1 | Tomato | nucleus | 39.27 | 34.03 |
| PGSC0003DMT400016260 | Potato | nucleus | 39.45 | 34.03 |
| CDX86474 | Canola | nucleus | 31.83 | 33.03 |
| CDX80268 | Canola | nucleus | 33.91 | 23.67 |
| CDY33039 | Canola | nucleus | 33.74 | 23.58 |
Protein Annotations
| EnsemblPlants:CDX70522 | EnsemblPlantsGene:GSBRNA2T00140353001 | Gene3D:1.10.246.220 | GO:A0A078C1C6 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0005488 | InterPro:Homeobox-like_sf | InterPro:IPR017930 | InterPro:Myb_dom | InterPro:SANT/Myb |
| PANTHER:PTHR21717 | PANTHER:PTHR21717:SF60 | PFscan:PS51294 | ProteinID:CDX70522 | ProteinID:CDX70522.1 | SEG:seg |
| SMART:SM00717 | SUPFAM:SSF46689 | UniParc:UPI0004EED0E1 | MapMan:15.5.2.2 | : | : |
Description
BnaC03g06060D
Coordinates
chrLK031791:+:862524..865693
Molecular Weight (calculated)
63957.7 Da
IEP (calculated)
7.575
GRAVY (calculated)
-0.561
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MVVKRRLNCG FDFSSVPKAP RSTRMKVSSK RDDVDSQLTA FDLLASLAGK LLEESESSST STYGDSQEDH HLVVNIKQEN VYNNKPCKSE LSHQGNLSSK
101: SPSENTSETC LQVSSLENDC VLDKAPVSDC GKIALGLKQP LVGCGNKNED CAVHVEQGEA TNGLMIPDTI SLKDPSHESV HLDGVLNGSL GGYMNQSKPM
201: TRVGHRRIKK SKYGRAFPRS KCFEDTRTDG CLKALYRKRK LCYGYNQWKH ETVHRKRRLS DKGLVVTSDG GLSSESVTNS PQKGESVKFS IKSFRIPELF
301: MEVPETATVG SLKRTVMEAV TALLGDGIHI GVLVQGKKVR DDNNTLSQTG LSSRENLDNL GFTLEPGSSE NHVNIMPTDS TNLSERSAAS LELDSIIPLC
401: LQDADHVINY GTCVEYSQEL VPYQSDITAD EQQPLSSDSR AIVPVPPLEP EALAVVPLSE KPKRTELSQR RTRRPFSVTE VEALVHAVEE LGTGRWRDVK
501: LRSFDDASHR TYVDLKDKWK TLVHTASISP QQRRGQPVPQ ELLDRVLAAH RYWSQHQVKQ NGKHQAAAMM VVESGAFM
101: SPSENTSETC LQVSSLENDC VLDKAPVSDC GKIALGLKQP LVGCGNKNED CAVHVEQGEA TNGLMIPDTI SLKDPSHESV HLDGVLNGSL GGYMNQSKPM
201: TRVGHRRIKK SKYGRAFPRS KCFEDTRTDG CLKALYRKRK LCYGYNQWKH ETVHRKRRLS DKGLVVTSDG GLSSESVTNS PQKGESVKFS IKSFRIPELF
301: MEVPETATVG SLKRTVMEAV TALLGDGIHI GVLVQGKKVR DDNNTLSQTG LSSRENLDNL GFTLEPGSSE NHVNIMPTDS TNLSERSAAS LELDSIIPLC
401: LQDADHVINY GTCVEYSQEL VPYQSDITAD EQQPLSSDSR AIVPVPPLEP EALAVVPLSE KPKRTELSQR RTRRPFSVTE VEALVHAVEE LGTGRWRDVK
501: LRSFDDASHR TYVDLKDKWK TLVHTASISP QQRRGQPVPQ ELLDRVLAAH RYWSQHQVKQ NGKHQAAAMM VVESGAFM
001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM
Arabidopsis Description
TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.