CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93437
KRH18559
KRH18561

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	KRG93437	AT3G01320.1	19962994
AT5G13820.1	KRH18559	AT3G01320.1	19962994
AT5G13820.1	KRH18561	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH30983	Soybean	nucleus	86.5	85.86
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	50.0	47.87
AT3G12560.2	Thale cress	nucleus	43.47	47.33
CDY08423	Canola	nucleus	43.32	47.17
CDY50529	Canola	nucleus	42.28	46.95
CDY42156	Canola	nucleus	42.28	46.49
Bra038729.1-P	Field mustard	nucleus	41.99	46.39
CDY50353	Canola	nucleus	41.84	46.38
PGSC0003DMT400060234	Potato	nucleus	47.18	46.15
CDX85624	Canola	mitochondrion	37.24	46.05
CDX91094	Canola	nucleus	37.98	45.96
Bra034751.1-P	Field mustard	nucleus	41.25	45.8
CDX70522	Canola	nucleus	39.17	45.67
Bra006218.1-P	Field mustard	mitochondrion	40.8	44.93
AT5G13820.1	Thale cress	nucleus	42.58	44.84
Solyc05g054410.2.1	Tomato	nucleus	45.7	44.7
CDX78540	Canola	nucleus	40.06	44.19
Bra023437.1-P	Field mustard	nucleus	37.24	43.88
CDY68172	Canola	nucleus	35.76	42.73
GSMUA_Achr8P20810_001	Banana	nucleus	40.8	42.24
PGSC0003DMT400016260	Potato	nucleus	41.69	41.94
Solyc04g011650.2.1	Tomato	nucleus	41.25	41.68
CDX69626	Canola	nucleus	36.2	41.15
Bra008800.1-P	Field mustard	nucleus	36.05	40.98
KRG99966	Soybean	nucleus	36.05	40.3
GSMUA_Achr7P15090_001	Banana	nucleus	40.95	39.83
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	37.98	39.69
GSMUA_Achr10P...	Banana	cytosol, plastid	5.34	39.13
KRH29783	Soybean	nucleus	39.76	38.84
KRH49110	Soybean	nucleus	34.87	38.78
KRH23087	Soybean	nucleus	40.06	37.6
KRH24782	Soybean	nucleus	35.01	37.58
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.32	37.22
KRH10245	Soybean	nucleus	39.47	36.94
Os03t0274300-01	Rice	nucleus	36.5	35.55
HORVU4Hr1G059800.2	Barley	nucleus	35.31	34.44
TraesCS4B01G207700.1	Wheat	nucleus	35.31	34.39
TraesCS4D01G208600.1	Wheat	nucleus	35.16	34.3
TraesCS4A01G096700.1	Wheat	nucleus	35.01	34.15
KXG39691	Sorghum	nucleus, plastid	35.76	34.14
TraesCS3D01G533700.1	Wheat	nucleus, plastid	30.86	32.0
TraesCS3A01G528500.1	Wheat	nucleus, plastid	30.86	31.95
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.16	31.91
TraesCS3B01G597500.1	Wheat	nucleus, plastid	30.56	31.64
Zm00001d047808_P001	Maize	nucleus, plastid	34.42	31.06
EES10985	Sorghum	mitochondrion	29.82	30.92
Zm00001d028608_P006	Maize	nucleus	30.86	29.89
TraesCS6D01G378100.1	Wheat	nucleus	26.56	26.68
TraesCS6A01G392300.1	Wheat	nucleus	26.41	26.53
TraesCS6B01G432500.1	Wheat	nucleus	25.96	26.08
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	22.85	19.82
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	25.96	19.29
Os02t0817800-03	Rice	nucleus	11.87	12.64

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100795471	MapMan:15.5.2.2	EMBL:ACUP02010822	EnsemblPlantsGene:GLYMA_18G037900	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930
UniProt:K7MPR7	ProteinID:KRG97904.1	ProteinID:KRG97905.1	EnsemblPlants:KRG97906	ProteinID:KRG97906	ProteinID:KRG97906.1
InterPro:Myb_dom	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	SUPFAM:SSF54236	UniParc:UPI0002965BA8	InterPro:Ubiquitin-like_domsf	SEG:seg	:

Description

hypothetical protein

Coordinates

chr18:-:3021794..3027430

Molecular Weight (calculated)

74925.8 Da

IEP (calculated)

9.489

GRAVY (calculated)

-0.582

Length

674 amino acids

Sequence
(BLAST)

001: MVLKKRVDYG FNGFRVPVIP KAPRSARRRV AFNKAVEDGQ VCAIELLASL AGQLLQESES SASSNASEGN HQPAFSQGVI EQDIQDEVKP LKMEEIHQGN
101: CAESTFKTEV ASQKSSQKPL SHTKTGHVSV NNSSDCCEKA EADVKSEIFE WDNKFGNYSN RLVETREKFR VSTHGNIKNG FKWEQEAGSS CIRGSNLADK
201: CSLEDHLELY VSPALIDSKS NIKSPFHRKF FPSASFSRYG NGIKLGFRDD DEKFLRCKRV CTKPKAFRSP RRIAHRRIRN LMSSKYWKTA PKLKDCELSD
301: LGVPRYHKRK TCYGFERSQH NAIVKKRKFV DRVSGVTSDG GFSSESVSNS PQKGMDADKP SSSAKLHVLK AKDSHVKFSI KSIRIPELYI EVPETSTVGS
401: LKRTIMEAVM AILGGGAHVG VLLQGKKVRD DNRTLVQTGI SCNENLDTLS FMLEPTSLRA SPTICVGDPS SQCETSQPTW PTETPVLDSG VTDTLHDSPL
501: LTYPGNLIES NHEPTSSLAD TTVNKITPDS RAIVAVPATT ETLAVVPVSQ KTKRSEFVQR RTRRPFSVTE VEALVHAVEE LGTGRWRDVK LRAFENADHR
601: TYVDLKDKWK TLVHTATISP QQRRGEPVPQ ELLDRVLAAH AFWSQHQAKQ HGKHQAGPGT LKITEASAER PCVC

Best Arabidopsis Sequence Match ( AT3G12560.2 )
(BLAST)

001: MVFKRKLDCL SVGFDFPNIP RAPRSCRRKV LNKRIDHDDD NTQICAIDLL ALAGKILQES ESSSASSNAF EEIKQEKVEN CKTIKSESSD QGNSVSKPTY
101: DISTEKCVVN SCFSFPDSDG VLERTPMSDY KKIHGLMDVG CENKNVNNGF EQGEATDRVG DGGLVTDTCN LEDATALGLQ FPKSVCVGGD LKSPSTLDMT
201: PNGSYARHGN HTNLGRKDDD EKFYSYHKLS NKFKSYRSPT IRRIRKSMSS KYWKQVPKDF GYSRADVGVK TLYRKRKSCY GYNAWQREII YKRRRSPDRS
301: SVVTSDGGLS SGSVSKLPKK GDTVKLSIKS FRIPELFIEV PETATVGSLK RTVMEAVSVL LSGGIRVGVL MHGKKVRDER KTLSQTGISC DENLDNLGFT
401: LEPSPSKVPL PLCSEDPAVP TDPTSLSERS AASPMLDSGI PHADDVIDSR NIVDSNLELV PYQGDISVDE PSSDSKELVP LPELEVKALA IVPLNQKPKR
501: TELAQRRTRR PFSVTEVEAL VQAVEELGTG RWRDVKLRAF EDADHRTYVD LKDKWKTLVH TASISPQQRR GEPVPQELLD RVLRAYGYWS QHQGKHQARG
601: ASKDPDMNRG GAFESGVSV

Arabidopsis Description

TRP3Telomere repeat-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9C7B1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.