Factsheet for AT5G13820.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91094	Canola	nucleus	57.81	66.43
Bra006218.1-P	Field mustard	mitochondrion	62.03	64.87
CDX78540	Canola	nucleus	61.88	64.81
CDX85624	Canola	mitochondrion	55.16	64.77
CDX70522	Canola	nucleus	56.72	62.8
CDX69626	Canola	nucleus	57.5	62.06
Bra008800.1-P	Field mustard	nucleus	57.19	61.72
Bra023437.1-P	Field mustard	nucleus	54.53	61.01
CDY68172	Canola	nucleus	53.44	60.64
AT3G12560.2	Thale cress	nucleus	52.81	54.6
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	47.5	43.18
KRG97906	Soybean	nucleus	44.84	42.58
PGSC0003DMT400060234	Potato	nucleus	45.47	42.24
Solyc05g054410.2.1	Tomato	nucleus	45.16	41.94
KRH30983	Soybean	nucleus	44.38	41.83
PGSC0003DMT400016260	Potato	nucleus	40.47	38.66
Solyc04g011650.2.1	Tomato	nucleus	40.0	38.38
AT3G46590.2	Thale cress	nucleus	32.81	37.97
AT3G53790.1	Thale cress	nucleus	23.59	37.75
AT1G07540.1	Thale cress	nucleus	36.09	36.67
AT5G59430.2	Thale cress	nucleus	31.88	35.29

Protein Annotations

Gene3D:1.10.246.220	MapMan:15.5.2.2	EntrezGene:831227	UniProt:A0A178UEI8	ProteinID:AED91945.1	EMBL:AF072536
EMBL:AK227016	ProteinID:ANM68452.1	ArrayExpress:AT5G13820	EnsemblPlantsGene:AT5G13820	RefSeq:AT5G13820	TAIR:AT5G13820
RefSeq:AT5G13820-TAIR-G	EnsemblPlants:AT5G13820.1	TAIR:AT5G13820.1	EMBL:AY029195	Unigene:At.19639	ProteinID:BAB11110.1
EMBL:BT046176	GO:GO:0000723	GO:GO:0000781	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627
GO:GO:0042162	InterPro:Homeobox-like_sf	InterPro:IPR000626	InterPro:IPR017930	InterPro:Myb_dom	RefSeq:NP_001330208.1
RefSeq:NP_196886.1	ProteinID:OAO91577.1	PO:PO:0000013	PO:PO:0000014	PO:PO:0000084	PO:PO:0000230
PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0007611	PO:PO:0007616	PO:PO:0009005
PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047
PO:PO:0009049	PO:PO:0020030	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	PFscan:PS50053
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60	UniProt:Q9FFY9	InterPro:SANT/Myb	SMART:SM00717
SUPFAM:SSF46689	Symbol:TBP1	UniParc:UPI000009F018	InterPro:Ubiquitin_dom	SEG:seg	:

Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]

Coordinates

chr5:+:4460840..4464737

Molecular Weight (calculated)

70488.1 Da

IEP (calculated)

7.188

GRAVY (calculated)

-0.578

Length

640 amino acids

Sequence
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.