Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY30842 | Canola | nucleus | 37.75 | 53.55 |
| AT3G46590.2 | Thale cress | nucleus | 42.0 | 30.38 |
| AT5G59430.2 | Thale cress | nucleus | 40.0 | 27.68 |
| AT1G07540.1 | Thale cress | nucleus | 43.5 | 27.62 |
| AT3G12560.2 | Thale cress | nucleus | 39.75 | 25.69 |
| AT5G13820.1 | Thale cress | nucleus | 37.75 | 23.59 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | ArrayExpress:AT3G53790 | EnsemblPlantsGene:AT3G53790 | RefSeq:AT3G53790 | TAIR:AT3G53790 |
| RefSeq:AT3G53790-TAIR-G | EnsemblPlants:AT3G53790.1 | TAIR:AT3G53790.1 | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003691 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006259 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0031627 | InterPro:Homeobox-like_sf |
| InterPro:IPR017930 | InterPro:Myb_dom | PFAM:PF00249 | PO:PO:0025195 | PFscan:PS51294 | PANTHER:PTHR21717 |
| PANTHER:PTHR21717:SF38 | InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | Symbol:TRFL4 |
| UniParc:UPI000173932E | InterPro:Ubiquitin-like_domsf | SEG:seg | : | : | : |
Description
TRFL4TRF-like 4 [Source:TAIR;Acc:AT3G53790]
Coordinates
chr3:+:19928478..19930267
Molecular Weight (calculated)
45001.1 Da
IEP (calculated)
9.906
GRAVY (calculated)
-0.466
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MVDCGVDIYQ LPVVPRACRS PRGRRLKIMR KQRSEFEVLA QVAGRFSGER KNRIVIGSLA HETKETKDDN VVVNNFLETM EVEVKPQPGL ENLSQVLLSK
101: DWLALGPSMP NSPITQEENF DSRSKIDSKR KVSHLKERGS CISQESQNMY PLKKRKLFYQ NHSSESHDTP CTVKFGIKSL NISELLVDVP ESATVGSLKL
201: AVLEAVTQIL KGGLNIGVLF QGKTIVDDSK TLLQIGIPYD DDDDENLGSL GFMLEPQKSE TTTITTLTTV SPRTRLRQNQ VLGSVDSTEA VAAKSVVPVR
301: MKPAWQPEMV QRRIRRPFTV SEVEALVQAV ERLGTGRWRD VKSHAFNHVN HRTYVDLKDK WKTLVHTAKI SARQRRGEPV PQDLLDRVLA AHAFWSDRTG
101: DWLALGPSMP NSPITQEENF DSRSKIDSKR KVSHLKERGS CISQESQNMY PLKKRKLFYQ NHSSESHDTP CTVKFGIKSL NISELLVDVP ESATVGSLKL
201: AVLEAVTQIL KGGLNIGVLF QGKTIVDDSK TLLQIGIPYD DDDDENLGSL GFMLEPQKSE TTTITTLTTV SPRTRLRQNQ VLGSVDSTEA VAAKSVVPVR
301: MKPAWQPEMV QRRIRRPFTV SEVEALVQAV ERLGTGRWRD VKSHAFNHVN HRTYVDLKDK WKTLVHTAKI SARQRRGEPV PQDLLDRVLA AHAFWSDRTG
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.