Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra002566.1-P | Field mustard | nucleus | 70.76 | 71.88 |
| AT3G46590.2 | Thale cress | nucleus | 53.11 | 55.52 |
| CDY33039 | Canola | nucleus | 71.63 | 50.06 |
| CDX80268 | Canola | nucleus | 71.63 | 50.0 |
| AT3G53790.1 | Thale cress | nucleus | 27.68 | 40.0 |
| GSMUA_Achr8P20810_001 | Banana | nucleus | 41.87 | 37.17 |
| AT1G07540.1 | Thale cress | nucleus | 40.14 | 36.83 |
| AT3G12560.2 | Thale cress | nucleus | 37.54 | 35.06 |
| GSMUA_Achr9P03910_001 | Banana | mitochondrion, nucleus | 38.75 | 34.73 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 42.73 | 34.69 |
| GSMUA_Achr7P15090_001 | Banana | nucleus | 40.66 | 33.91 |
| Os03t0274300-01 | Rice | nucleus | 39.27 | 32.8 |
| GSMUA_Achr10P... | Banana | cytosol, plastid | 5.19 | 32.61 |
| AT5G13820.1 | Thale cress | nucleus | 35.29 | 31.88 |
| KXG39691 | Sorghum | nucleus, plastid | 38.93 | 31.87 |
| TraesCS4A01G096700.1 | Wheat | nucleus | 37.2 | 31.11 |
| TraesCS4D01G208600.1 | Wheat | nucleus | 37.2 | 31.11 |
| TraesCS4B01G207700.1 | Wheat | nucleus | 37.2 | 31.07 |
| HORVU4Hr1G059800.2 | Barley | nucleus | 37.02 | 30.97 |
| TraesCS3D01G533700.1 | Wheat | nucleus, plastid | 33.56 | 29.85 |
| HORVU3Hr1G115540.2 | Barley | nucleus, plastid | 33.91 | 29.79 |
| TraesCS3A01G528500.1 | Wheat | nucleus, plastid | 33.39 | 29.65 |
| TraesCS3B01G597500.1 | Wheat | nucleus, plastid | 32.87 | 29.19 |
| EES10985 | Sorghum | mitochondrion | 32.35 | 28.77 |
| Zm00001d047808_P001 | Maize | nucleus, plastid | 36.85 | 28.51 |
| Zm00001d028608_P006 | Maize | nucleus | 33.22 | 27.59 |
| TraesCS6B01G432500.1 | Wheat | nucleus | 29.24 | 25.19 |
| TraesCS6A01G392300.1 | Wheat | nucleus | 29.07 | 25.04 |
| TraesCS6D01G378100.1 | Wheat | nucleus | 29.07 | 25.04 |
| HORVU6Hr1G091110.8 | Barley | cytosol, nucleus, plastid | 25.61 | 19.05 |
| Zm00001d025679_P001 | Maize | cytosol, nucleus, plastid | 28.72 | 18.3 |
| Os02t0817800-03 | Rice | nucleus | 13.15 | 12.01 |
Protein Annotations
| Gene3D:1.10.246.220 | MapMan:15.5.2.2 | PDB:2AJE | Gene3D:3.10.20.90 | EntrezGene:836062 | ProteinID:AED97184.1 |
| ProteinID:AED97185.1 | ProteinID:AED97186.1 | ProteinID:AED97187.1 | EMBL:AK316779 | EMBL:AK318830 | ProteinID:ANM70341.1 |
| ArrayExpress:AT5G59430 | EnsemblPlantsGene:AT5G59430 | RefSeq:AT5G59430 | TAIR:AT5G59430 | RefSeq:AT5G59430-TAIR-G | EnsemblPlants:AT5G59430.2 |
| TAIR:AT5G59430.2 | Symbol:ATTRP1 | EMBL:AY128382 | EMBL:AY519544 | Unigene:At.42990 | ProteinID:BAA97479.1 |
| EMBL:BT000117 | ProteinID:CAB50690.1 | ncoils:Coil | GO:GO:0000783 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003677 | GO:GO:0003691 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005737 | GO:GO:0005886 | GO:GO:0006139 |
| GO:GO:0006259 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0006950 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009628 | GO:GO:0009651 | GO:GO:0009719 |
| GO:GO:0009723 | GO:GO:0009733 | GO:GO:0009739 | GO:GO:0009751 | GO:GO:0009753 | GO:GO:0009873 |
| GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0031627 | GO:GO:0031965 | GO:GO:0046686 |
| InterPro:Homeobox-like_sf | InterPro:IPR000626 | InterPro:IPR017930 | InterPro:Myb_dom | RefSeq:NP_001078770.1 | RefSeq:NP_001078771.1 |
| RefSeq:NP_001331960.1 | RefSeq:NP_200751.1 | RefSeq:NP_851221.1 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 |
| PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 |
| PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 |
| PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 |
| PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 |
| PO:PO:0025281 | PFscan:PS50053 | PFscan:PS51294 | PANTHER:PTHR21717 | PANTHER:PTHR21717:SF38 | UniProt:Q8L7L8 |
| InterPro:SANT/Myb | SMART:SM00717 | SUPFAM:SSF46689 | SUPFAM:SSF54236 | UniParc:UPI00000A51BE | InterPro:Ubiquitin-like_domsf |
| InterPro:Ubiquitin_dom | SEG:seg | : | : | : | : |
Description
TRP1Telomere repeat-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7L8]
Coordinates
chr5:+:23967217..23970996
Molecular Weight (calculated)
65039.7 Da
IEP (calculated)
8.399
GRAVY (calculated)
-0.679
Length
578 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSHKCVEEF GYASYLVPSN ARAPRSARKR RSIEKRISKE DDNMCAIDLL ATVAGHLSFE SGSSLMSIDK LIEDHRVKEE FPEEEKPLMP VALSPYRGSL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQQLQQNV NKLEQETQSQ TTEGLLLL
101: SPCGFSSVIN GKVENEVDGF SYSGGSDACQ VGNFSQDVKP DIDGDAVVLD ARPNVVVSLG SSSRTEVPSI GNCVSHGVRD DVNLFSRDDD ENFSKYIHPR
201: VTKHSPRTVP RIGDRRIRKI LASRHWKGGS RHSDTKPWRN YYLHQQRSYP IKKRKNFDHI SDSVTDDYRM RTKMHRGSRK GQGASFVASD SHVKLRIKSF
301: RVPELFIEIP ETATVGSLKR MVMEAVSTLL SDGHRVGLMV QGKKVRDDNK TLHQTGISQD NSHLDSLDFS LEPSSEMPQL LTSHPLGHAC EELLPVCQAT
401: KIDNVLESDH HDSALFPSDS LGNNNVTEDS KAMISVALNE LSSQSQPPSR KSRRSEQQQQ QAAQRRIRRP FSVAEVEALV QAVEKLGTGR WRDVKLCAFE
501: DADHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLNR VLNAHGYWTQ QQMQQLQQNV NKLEQETQSQ TTEGLLLL
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.