Factsheet for HORVU3Hr1G115540.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G533700.1	Wheat	nucleus, plastid	93.92	95.08
TraesCS3B01G597500.1	Wheat	nucleus, plastid	92.1	93.09
TraesCS3A01G528500.1	Wheat	nucleus, plastid	90.88	91.86
EES10985	Sorghum	mitochondrion	57.75	58.46
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.6	39.38
GSMUA_Achr8P20810_001	Banana	nucleus	38.91	39.32
AT3G46590.2	Thale cress	nucleus	31.0	36.89
VIT_06s0004g04940.t01	Wine grape	nucleus	38.3	36.21
HORVU4Hr1G059800.2	Barley	nucleus	37.69	35.89
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	38.45	35.53
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	41.49	35.14
GSMUA_Achr7P15090_001	Banana	nucleus	36.93	35.06
CDY06712	Canola	nucleus	31.46	34.73
Bra015585.1-P	Field mustard	nucleus	31.46	34.62
CDY10282	Canola	nucleus	31.31	34.33
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	46.81	33.96
AT5G59430.2	Thale cress	nucleus	29.79	33.91
Solyc06g005590.2.1	Tomato	nucleus	35.41	33.82
PGSC0003DMT400005476	Potato	nucleus	35.41	33.67
PGSC0003DMT400060234	Potato	nucleus	34.95	33.38
AT1G07540.1	Thale cress	nucleus	31.76	33.17
Bra002566.1-P	Field mustard	nucleus	28.57	33.04
Solyc05g054410.2.1	Tomato	nucleus	34.5	32.95
CDY15617	Canola	nucleus	29.33	32.71
Bra030689.1-P	Field mustard	nucleus	29.94	32.45
KRH24782	Soybean	nucleus	30.85	32.32
PGSC0003DMT400077969	Potato	nucleus	34.04	32.23
KRG99966	Soybean	nucleus	29.48	32.17
Solyc06g076270.2.1	Tomato	nucleus	34.19	32.14
VIT_08s0007g00500.t01	Wine grape	nucleus	33.28	31.88
KRH49110	Soybean	nucleus	29.33	31.85
KRH29783	Soybean	nucleus	33.28	31.74
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	33.74	31.53
KRH23087	Soybean	nucleus	34.35	31.48
KRH10245	Soybean	nucleus	34.19	31.25
KRG97906	Soybean	nucleus	31.91	31.16
GSMUA_Achr10P...	Banana	cytosol, plastid	4.26	30.43
KRH30983	Soybean	nucleus	31.31	30.34
CDX86474	Canola	nucleus	25.53	30.16
Solyc04g011650.2.1	Tomato	nucleus	29.94	29.54
PGSC0003DMT400016260	Potato	nucleus	29.79	29.25
CDY33039	Canola	nucleus	28.72	22.85
CDX80268	Canola	nucleus	28.42	22.58
Solyc12g027690.1.1	Tomato	extracellular	5.32	22.58
Solyc12g027710.1.1	Tomato	cytosol	6.99	19.01

Protein Annotations

EnsemblPlants:HORVU3Hr1G115540.2	EnsemblPlantsGene:HORVU3Hr1G115540	Gene3D:1.10.246.220	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0005488	InterPro:Homeobox-like_sf	InterPro:IPR017930	InterPro:Myb_dom	InterPro:SANT/Myb	InterPro:Ubiquitin-like_domsf
PANTHER:PTHR21717	PANTHER:PTHR21717:SF37	PFscan:PS51294	SEG:seg	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	UniParc:UPI000295DE0C	UniProt:M0X6E6	MapMan:15.5.2.2	:	:

Description

No Description!

Coordinates

chrchr3H:-:693391092..693396465

Molecular Weight (calculated)

71456.9 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.467

Length

658 amino acids

Sequence
(BLAST)

001: MVVRKRLDYG SRGHQVPAMP RVPSSARGKR SARRKKDEMT PFDLLATVAG TLLVDHENSS NAPGINAAAL TYARKRKSVK AELCDDVPPL KSVAVENCIV
101: GSGGVCASPR QANICLAENS STRNGTDPVL ESLTVKPNML VRDSLFSCTK SCNRGHGVGG IPECGAYGVC LPGTSRSLEA TNQVQVQQPV DGDTTALYSL
201: VSSVDLDGRP PALVSSDSSS GVPLCIHDKD HKTSPLFHAE ARHAADRDDD ENSSGCTHPC TTGNNKSYMP QYTGDSRIRK MFASKIRKAA RNKMCGEMSN
301: KGSKLNLCAK KISTSRQRVQ RAMFKRQKPV RRHFTPSSAK GILSEASGAS FSVEGQNPLC GSEDYNVKLR IKSFTIPELF IEIPENATVG SLKRTVMDVV
401: TSIIESGLRV GVLLQGKSIQ DDSKTLRQAR ICHGENLENI DFTLECEAGQ NSSHGVRIPE EMDFPGADAM EPLAMVKCEE PFSETKAGYN SQQRVQASPN
501: RVQSEHGSVH SLFETTAHEA SASSQAIVPV ASPSSEALAI VPVCKSKRPV IGQRRIRRPF SLPEVEALVE AVEQLGTGRW RDVKMLAFDN TDHRTYVDLK
601: DKWKTLVHTA SISPQQRRGE PVPQGLLDRV LAAQAYWSQQ QQQQISGKAA LQGCSSSC

Best Arabidopsis Sequence Match ( AT3G46590.2 )
(BLAST)

001: MVSHKVLEFG DDGYKLPAQA RAPRSLRKKR IYEKKIPGDD KMCAIDLLAT VAGSLLLESK SPVNACLVVQ NTVKNEYPAD ENPVKAVPYS ESPSLFDNGK
101: CGFSSVITNP NHLLVGDKVG KEVEGFSSLG VSGDVKPDVV ASIGSNSSTE VGACGNGSPN ESRDDVNLFS RNDDDENFSG YIRTRMTRPV PRIGDRRIRK
201: ILASRHWKGG SKNNTDAKPW YCSKRSYYLH HHQRSYPIKK RKYFDSVYDS NSDDYRLQGK THKGSRTISS MKSRNASFVS RDHHVKLRIK SFRVPELFVE
301: IPETATVGSL KRMVMEAVTT ILGDGLRVGL MVQGKKVRDD GKTLLQTGIS EENNHLDSLG FSLEPSLETT PQPLLSSYLS DHACDDVTLC HDNALDSSHE
401: PEPSPADSFG KLGTSDHSRA LIPVASAAML APRPPNRKFK RTEQQLAAQR RIRRPFSVTE VEALVQAVEK LGTGRWRDVK VRAFEDADHR TYVDLKDKWK
501: TLVHTARISP QQRRGEPVPQ ELLDRVLKAH AYWSQHLMHQ LQTEPPSTQV EAL

Arabidopsis Description

TRP2Telomere repeat-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SNB9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.