Factsheet for VIT_08s0007g00500.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 3
nucleus 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04940.t01	Wine grape	nucleus	46.58	45.98
VIT_13s0019g01670.t01	Wine grape	nucleus, plastid	43.96	42.9
KRG99966	Soybean	nucleus	37.41	42.62
GSMUA_Achr8P20810_001	Banana	nucleus	40.32	42.55
KRH49110	Soybean	nucleus	37.41	42.41
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	38.57	41.09
GSMUA_Achr7P15090_001	Banana	nucleus	40.17	39.83
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	39.88	38.48
KXG39691	Sorghum	nucleus, plastid	36.97	35.98
GSMUA_Achr10P...	Banana	cytosol, plastid	4.66	34.78
Os03t0274300-01	Rice	nucleus	34.79	34.54
TraesCS3B01G597500.1	Wheat	nucleus, plastid	32.17	33.95
HORVU4Hr1G059800.2	Barley	nucleus	34.06	33.86
TraesCS4B01G207700.1	Wheat	nucleus	34.06	33.81
TraesCS3A01G528500.1	Wheat	nucleus, plastid	32.02	33.79
TraesCS4A01G096700.1	Wheat	nucleus	33.92	33.72
TraesCS4D01G208600.1	Wheat	nucleus	33.92	33.72
TraesCS3D01G533700.1	Wheat	nucleus, plastid	31.88	33.69
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.88	33.28
Zm00001d047808_P001	Maize	nucleus, plastid	35.23	32.4
Zm00001d028608_P006	Maize	nucleus	32.02	31.61
EES10985	Sorghum	mitochondrion	29.69	31.38
TraesCS6A01G392300.1	Wheat	nucleus	25.76	26.38
TraesCS6D01G378100.1	Wheat	nucleus	25.76	26.38
TraesCS6B01G432500.1	Wheat	nucleus	25.47	26.08
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	23.0	20.33
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	24.89	18.85
Os02t0817800-03	Rice	nucleus	12.08	13.11

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100247654	wikigene:100247654	MapMan:15.5.2.2	ProteinID:CBI30542	ProteinID:CBI30542.3
UniProt:D7THM6	EMBL:FN595991	GO:GO:0000783	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003691	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006259	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016043
GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930	EntrezGene:LOC100247654	wikigene:LOC100247654	InterPro:Myb_dom
PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF56	InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689
SUPFAM:SSF54236	UniParc:UPI0001BE3629	InterPro:Ubiquitin-like_domsf	ArrayExpress:VIT_08s0007g00500	EnsemblPlantsGene:VIT_08s0007g00500	EnsemblPlants:VIT_08s0007g00500.t01
RefSeq:XP_002270720	RefSeq:XP_002270720.2	RefSeq:XP_010654272.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:+:14785622..14791118

Molecular Weight (calculated)

76089.3 Da

IEP (calculated)

9.951

GRAVY (calculated)

-0.661

Length

687 amino acids

Sequence
(BLAST)

001: MVLQKRLDYG FSGYQVPWVP RASRSPRGRG SSKKKLEDDR IYAFEVLASL AGKLLQERET SASISDASRK NQHTVVKCET HDKGHQIKLE PRDENTLAYV
101: PHANDDLSLK ISSTINSDLP ENVCFSDKLD VDCRQKARGS SPSKVAGDFP CCGIFFEGNV DSVIEKNLEV EPQEIRGMVS KTHPKKGSSK DLGELDRATL
201: APVHLDNNAK ASLFSDHMNC GPSPRCQENM EVVSGDDDEN SSGCSQPGTI MKTYTPRRHI GNQRIRKLSA SRCWGGTPNL KDGGFLNTDR KRKPVYWTWK
301: TCYPRRRSQR ISPFKRRKLL DQNPESTSDR GLRRKLLDQN PESTSDRGLR RKLHNQNLES AFDRGFSCAG MYNSHNKGKK SENSSAAGGA SSSVAGQQAP
401: SHSRDCNVKL SIKSFRVPEL FVEIPATATV GSLKRTVMEA VTAVLGGGLH VGILLQGKKV GDDSKTLLQS GISQGDKLRT LGFMLEPRCT QIPPSLCAED
501: PAVFLHGCTP QHLTSFSTTP TSGPGTSKIS PDPPVTNLSK CVQRNHDTAP SHTDISTDKT IPESRALLAV PSVSLKPLAM VPFHQKSRRP EFVQRRIRRP
601: FSVSEVEALV QAVENLGTGR WRDVKLCAFD GAKHRTYVDL KDKWKTLVHT AKISPQQRRG EPVPQELLDR VLAAHAYWSQ QQVKVEV

Best Arabidopsis Sequence Match ( AT1G07540.1 )
(BLAST)

001: MVLQKRPDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS SSSSNNTSGN NEDQCAVKKE PLNGGDIMVE EETTNSDHDN
101: NNAERSFFVS EILQKSHEMQ SFNRSPSPLK EFHFGSSSGI TSDSSEKFET QELAYDESKI NNGDCYRSES NDKKSMLGGL NFEAKLSRNV VGKDEKHIGS
201: GFRKPIPQNP STCSDDVDLH GKENDDGENF SACYRTKSFR STLRIGDRRI RKVWASKYCK VPPKLKDTTV TNSDLDLKSD YYSKKHCLKS LRSERNYPIK
301: KRRYFDGYTA SQSEETNKNE GQSGSPRKAS AFLSSIACQK QPAAFQSPRD SNNVKLGIKS FRVPELFIEI PETATVGSLK RTVLEAVTSI LGGGLRIGVL
401: VHGKKVRDDS KMLLQTGLSL DTLSDTLGFC LEPNPPQSTK PLSPEDSDFA RPCNVPHTLT RCLPSPGKHA KPSNSVESDL DSKPSAPNRG KTIYSRALIP
501: VSPLHAQALT VVPPRKTKRS EVAQRRIRRP FSVAEVEALV QAVERLGTGR WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR
601: VLTAHAYWSQ QQGKHQLLEG PQQLETSLGL

Arabidopsis Description

TRP5Telomere repeat-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6R0E3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.