Factsheet for VIT_13s0019g01670.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
vacuole 1
mitochondrion 2
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_14s0066g02330.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G13820.1	VIT_14s0066g02330.t01	AT3G01320.1	19962994

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0004g04940.t01	Wine grape	nucleus	51.56	52.16
KRH30983	Soybean	nucleus	49.15	50.96
Solyc05g054410.2.1	Tomato	nucleus	49.01	50.07
KRG97906	Soybean	nucleus	47.87	50.0
PGSC0003DMT400060234	Potato	nucleus	48.58	49.64
AT5G13820.1	Thale cress	nucleus	43.18	47.5
AT3G12560.2	Thale cress	nucleus	41.34	47.01
CDY42156	Canola	nucleus	40.2	46.17
GSMUA_Achr8P20810_001	Banana	nucleus	42.33	45.78
CDY50353	Canola	nucleus	39.49	45.72
CDY08423	Canola	nucleus	40.2	45.72
CDX85624	Canola	mitochondrion	35.37	45.69
CDX70522	Canola	nucleus	37.5	45.67
PGSC0003DMT400016260	Potato	nucleus	43.47	45.67
CDY50529	Canola	nucleus	39.35	45.63
Solyc04g011650.2.1	Tomato	nucleus	43.18	45.58
Bra038729.1-P	Field mustard	nucleus	39.49	45.57
CDX78540	Canola	nucleus	39.49	45.5
Bra034751.1-P	Field mustard	nucleus	39.06	45.3
CDX91094	Canola	nucleus	35.8	45.24
Bra006218.1-P	Field mustard	mitochondrion	39.06	44.93
GSMUA_Achr9P03910_001	Banana	mitochondrion, nucleus	40.34	44.03
VIT_08s0007g00500.t01	Wine grape	nucleus	42.9	43.96
CDX69626	Canola	nucleus	36.65	43.51
Bra023437.1-P	Field mustard	nucleus	35.09	43.18
Bra008800.1-P	Field mustard	nucleus	36.36	43.17
CDY68172	Canola	nucleus	34.52	43.09
GSMUA_Achr7P15090_001	Banana	nucleus	42.05	42.71
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	42.05	41.57
KXG39691	Sorghum	nucleus, plastid	38.21	38.1
Os03t0274300-01	Rice	nucleus	37.22	37.86
HORVU4Hr1G059800.2	Barley	nucleus	36.36	37.05
TraesCS4D01G208600.1	Wheat	nucleus	36.22	36.9
TraesCS4A01G096700.1	Wheat	nucleus	36.22	36.9
TraesCS4B01G207700.1	Wheat	nucleus	36.08	36.71
GSMUA_Achr10P...	Banana	cytosol, plastid	4.69	35.87
Zm00001d028608_P006	Maize	nucleus	33.95	34.34
Zm00001d047808_P001	Maize	nucleus, plastid	36.36	34.27
TraesCS3A01G528500.1	Wheat	nucleus, plastid	31.25	33.79
HORVU3Hr1G115540.2	Barley	nucleus, plastid	31.53	33.74
TraesCS3D01G533700.1	Wheat	nucleus, plastid	30.97	33.54
EES10985	Sorghum	mitochondrion	30.97	33.54
TraesCS3B01G597500.1	Wheat	nucleus, plastid	30.54	33.03
TraesCS6A01G392300.1	Wheat	nucleus	28.27	29.66
TraesCS6B01G432500.1	Wheat	nucleus	28.12	29.51
TraesCS6D01G378100.1	Wheat	nucleus	27.98	29.36
HORVU6Hr1G091110.8	Barley	cytosol, nucleus, plastid	25.43	23.04
Zm00001d025679_P001	Maize	cytosol, nucleus, plastid	27.13	21.06
Os02t0817800-03	Rice	nucleus	13.92	15.48

Protein Annotations

Gene3D:1.10.246.220	EntrezGene:100259786	wikigene:100259786	MapMan:15.5.2.2	EMBL:AM472384	ProteinID:CAN72738
ProteinID:CAN72738.1	ProteinID:CCB56339	ProteinID:CCB56339.1	UniProt:F6HNW9	EMBL:FN595998	GO:GO:0000783
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003691	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0016043	GO:GO:0031627	InterPro:Homeobox-like_sf	InterPro:IPR017930
EntrezGene:LOC100259786	wikigene:LOC100259786	InterPro:Myb_dom	PFscan:PS51294	PANTHER:PTHR21717	PANTHER:PTHR21717:SF60
InterPro:SANT/Myb	SMART:SM00717	SUPFAM:SSF46689	SUPFAM:SSF54236	TIGR:TC61736	UniParc:UPI0002107FE7
InterPro:Ubiquitin-like_domsf	ArrayExpress:VIT_13s0019g01670	EnsemblPlantsGene:VIT_13s0019g01670	EnsemblPlants:VIT_13s0019g01670.t01	RefSeq:XP_002278443	RefSeq:XP_002278443.2
RefSeq:XP_010658557.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr13:+:3133447..3139555

Molecular Weight (calculated)

77577.1 Da

IEP (calculated)

8.479

GRAVY (calculated)

-0.555

Length

704 amino acids

Sequence
(BLAST)

001: MVLKKKQDYG FNGFHVSTIP RAPRSIRRRG SIKKPVEDSQ ICAIDLLATL AGKLLQESES SSASSNVAAG KDRLNISKDG IKQELQDDDK PLKGECLDQG
101: SCEGIVFVSK LASQDLSPKY TVKQFPHAVH DAVLDCTSTV ASPDYLDKVG CDVMVTCKSK NIFGKVPCKV ERGSPDCGET CGDLENGAEI RQDAEGEESG
201: GLTMANRCSS KDSVELCMKN PAQINSDSNV KLSLNRDSIP NASFPKHRND VKIGIIDDDE NSYRCNQHGT KIKAFRSSPC IGDQRIRKLL TSRYWKVAPK
301: LKDCELSNTD GGIKPVFRKR KFCGTRKRYQ RETTFKRRKL FERHMVVASD GGISSESVTN SPEKNMNTEM GGSAAMLHGV SGLSSSVISH QASFNSGDSH
401: VKFSIKSFRV PELFIEVPET ETIGALKRTV MEAVNSIFGG GLHVGMFLQG KKVRDDYKTL RQTGISHNDN LDTLGFALEP SPIHPSPPLH TEDPPFLLPS
501: DTSQLLTRSP DPPTFDSGFS DATPDPSPLT NLGNQVEKIH DSVPSPTDIL TDKTMPDSRA LVAVPAMSLE ALAVVPMNMK TNRADLVQRR TRRPFSVSEV
601: EALVHAVEEL GTGRWRDVKL RAFDNAKHRT YVDLKDKWKT LVHTARISPQ QRRGEPVPQE VLDRVLSAHA YWSEHQAKQH GKHQVGTLRI TGPLAERDGI
701: GQDI

Best Arabidopsis Sequence Match ( AT5G13820.1 )
(BLAST)

001: MVVKRKLNCG GSNGFDFPNI PKAPRSSRRK VSGKRSDDES EICAIDLLAS LAGKLLEESE SSSTSTYASE ADNLDHLGGL IKQELEDGYT TKPCKSEFFD
101: PGNPASKSTS ENTSVTCLPF SSFENDCILE QTPVSDCKRA SGLKSLVGSI TEETCVVNED AGSEQGANTF SLKDPSQLHS QSPESVLLDG DVKLAPCTDQ
201: VPNDSFKGYR NHSKLVCRDD DENYCKYYKF SDKCKSYRPL SRVGNRRIMQ SVRAISKLKC FEDTRTDGRL KALYRKRKLC YGYNPWKRET IHRKRRLSDK
301: GLVVNYDGGL SSESVSNSPE KGESENGDFS AAKIGLLSKD SRVKFSIKSL RIPELVIEVP ETATVGLLKR TVKEAVTALL GGGIRIGVLV QGKKVRDDNN
401: TLSQTGLSCR ENLGNLGFTL EPGLETLPVP LCSETPVLSL PTDSTKLSER SAASPALETG IPLPPQDEDY LINLGNSVEN NDELVPHLSD IPADEQPSSD
501: SRALVPVLAL ESDALALVPV NEKPKRTELS QRRTRRPFSV TEVEALVSAV EEVGTGRWRD VKLRSFENAS HRTYVDLKDK WKTLVHTASI SPQQRRGEPV
601: PQELLDRVLG AHRYWTQHQM KQNGKHQVAT TMVVEAGSSM

Arabidopsis Description

TRP4Telomere repeat-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.